Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040500 [exp] 394 / 9e-116 ND / Potri.001G247100 [exp] 379 / 2e-110 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005872 pacid=23176949 polypeptide=Lus10005872 locus=Lus10005872.g ID=Lus10005872.BGIv1.0 annot-version=v1.0 ATGGGGTTTGATAACGAGTGCATTCCTAATATCCAATCTCTAGCTGGGGAGTATTTTTGTCCAGTTTGTCGCATGCTTGTATACCCACATGAAGCATTGC AGTCACAATGCACTCACCTATACTGCAAATCATGCTTAGCATACGTTGCAGCTACCACCCAGGCTTGTCCATACGATGGCTATTTAGTGACAGAAGCAGA TTCCAAGCCACTACTGGAATCCAACAAATCACTTGCTGAAGCTATCGGCAAGATACAGGTGCATTGTTTATACAATAGGAGCGGATGCACATGGCAGGGT CCTCTGTCTGAGTGCACAACTCATTGTTCTGGATGCGCCTTTGGTAATTCAGCAGTTGTGTGCAATAGGTGTGGTGTTCAAATAGTGCACCGACAAATCC ATGAACATGCACAAACTTGTGCTGGTGTGCAGCCGCAAGCTTCGAATGCTGATGGTTCTCAGGTTTCTGCAACGTCAGGGGCTGTGGCATCTAACGACCA CAGGCAGGTTGCTGTTCAGGCAGTAGTAACTAGTGCTCAATCTCATGTTTCTCAATCTAAGACATCCTTGACATCTTCCCAAGAGACAATCCTTCAATCT CACTTGACTACTACAACCCCAGCTGTGACACAAGCTTCGGTGCCAATTTCAGAACCATTGTATCAACAACACCAGTACTATCAGCAGTATCCTGGCTATT TTCCATATCAGCAGCATTATCAGCAATACTACCAGCAGACTGCTCAACAATACCAGCAACCACATGCATATGTGCAGCCTTCAAATTCTCAAACACTGGT TTCGCCTCAATTGCCAATTCAACTACAGGCTCAAACACAATCGCAGCTGCAGACACTACCTGAAGCACAATCTCAATCCCAATCTCAATCACAAATGCAA GTCCCAATTGCTGTTGAACCCCAGATTCAAGCACAAATCAACCTACAGCAGCAAACTCAACCCACTAATCATCAGCTTCAGTATCAAGCACAGTCTCACC CTACTCCACATGGTCATTTGCCTCCACAATCTCAGCCTCAGGCCCATGGTCAGGCCCTGCCAGTTCAGTCTCAGCAGATTGTATGTCAGCAACTACCTTC ACAGTCACAGAATGCAGCGTCCCAAATTCATAATCCGGCACATTCACATCCTCAACATGTCCCTCAGATTCAGTCTACCACCCAAGTACAGGCACAAATG CTTGTCCATCACCATCTGCAACTGGTTCAACCGCCCTTTGCTTCTCAGCCTAGCCAATTTAGAAACCCTACTCATCAAGCTGTGGCTGGGCATCAGTCTT ATGTACAACCACAGTCTCATCACCCCATGCTGCCTGTCAATATGTATCCTCAAAGTGTACCTTTACAACAGTCCCAGCATCCTGTCCAAATGCAGAGTCA GTTCCCTCAACCCCCTACCCTGTTACATCACTTACAGTCTCATGGGATGCCTCCGAACCTCCAGCCGGAAGGTACTTTTACGTCGTCGAGTCAAGTCTCC AATGCTGTGCCTGACCTCCAGAATCCCTTGCACAACCAGGCTCATCAAACGAGACTTGCAGTTCACCAGAGACCTGTTCCACAACCAGCTCAACAACCAA TGCATCAGCAGTATGTGCAAAACCAGCAGCATTTTTCCGGGCAACCTTTTGGTCAGAATCATAAACATCAGCAGATTCATCATATGCAGCAAAATGTGCA TTCGCACTCACAATTACGCCCTCAGGCGTTTCCAAAACAATTTCAGGAATCACCTCAGAGCTACCCACAACCGCAACAGAATAGTTCGTCACTGCATGTA GGGCATACACAGCATGCTCAAGATCTTGCAGGAAGGTCTGTAGTGCCTCCTGTTGGAGTCCAAGACAATCCACATGGGCACCTATCTGGGCCTAGCTTAA GAGCAATGTTTGTTAACAAATCTCATTCATTGGCCGAGGAAGGGGTTGGAGTTGATGCGTTGTCTCAGGGAACCGCTAAACCAGGTTCGGGTGCTTTGCA TATCCCTGCAGCTAAAGCTGACGTGACTATAAAATCTGACAGTGACTTGAAGCCGACAAATTGTGAGACTAAATCAACAGGTGAAACCAAAGATGCTTTG GGATCACAATCAGCTATTAACCTCGACCCTACTACGCGACGGTTGCAAGAGGAGTCGGAAGAGGGGGGTGGAGGTAAAAAAGATGTTTCTGATGCTGTTA ACAAAGAAGATGACAGTTCTGTGTCAGTAGAGAATGAGATGCTAAAGAATTCTCTGTCAAAAGAGGGTGTTAGTCATGAGGAACAGCTTTCAAATTCACA TGATGGAAATCTGGTTTCCCAAAGTTCTGTCTTTGTCCATAATAAGGTAACTGTCCACAATAAGGATGGTATGTCTTCTCTCCTTCATAAGCCTCCGACT GGACTAACATCATTACAAGGACCTCCAGCACCCTCTGTTGGGCATTCTTCTCAACATAGGCCTCATGGATCAGCACATATACCTCAAGTTGGGCAAACTT TGAATCCCGTTCCTGAAAATGTCCGATGTGCTGGATACAATGAATCACATGTCCCTGAAATCTTACCAGGTGGCTTCCAAGGCCCAAAATCAGCTTTAGC ATCTGGATTGAGTTATGATGGTCCTTCTCAAGAGCCTCATACCCAGGGAAATAGTGCTCTTTCTCAAGGTGACATAGCAACATTTAATAACCGTGAAGGT GAAATGTTTCCTCATCTAAGGCCAAATCCCAGTATAAAGTCAAATGCAACAGGAATGAATATGGTTCCAGGACATCTATTTGACTCCTCATCAATGCTTG GTTTGCAGAATGGAAGATTTGGGCCTTTTGCAGGTGAGCATGTGCATCCCTTCTCACAAGATGCAGCTCGTCGTGTGGCTGATCGAGAACAGTTGGAAGA GGATCTCAAGGTCTTTTCTAGGCCCTCCCATTTGGAGGCTGGCCTTGCTTTAAAGTTTCGAGGTCCTCATGGTTTTAGAGGAGATATTGTTCACAGAGCC CCTGAAGATGGACCTTATCGGCTAACTTATGATTCTGGCTCAAATATGGAGACTGTCGCTAGCCGTGCTCCTTCTAGACACTTTCCTCCATATAATCATG AATCTGCATTTCGTTGCACTGATGTTGGAGAAGGTCCAATTGGTTTTCATGGTAAGCCTTTTGGTCGACTGGACCTGGCTAGATCGCATAAAGATTTACT TGGTCCTGGTGCTGGATATGCTCAACGTCATGCAGATAGCTTAGGCTCAAGGAGTCCTGGCAGGGATTATCTATCCTTGCGTAAATTCGGTCCCTTTCCT AGCTTAGATGATGTGCATGGTAGAGAGAACAAAAGATTTGATGGTTCAAGTGGCAGATCCTTCTATGATCCCAGGTTCCCTGTTTGGTCAAGCCATTCAC GCCGGGACGAGTTTCATGGTCTTGGGAGTTCACGCGTTTCTGATCATTATAGGTTCAGTGAATTTATTGGTCAAGACGGTATGCCTAGCCACTTGAGGGG TGAAAACTTTGGTCCTCATAAACTGCCTGGTCATTTGAGGTTCACAGAGCAAGCTGGTCTTGGTCCGATTCATGGACATCTCCCAGTGAGGGAATTTCCT GCGAATGGGAACTTTCATGCTGCCCGGTTTGGTGAGCCTGGATTTCGTAGCAGCTTTACCCTTAATAGTTTTCCTGGTGGCGAGAGAAACTATGCAGTTA ACTGTTCAAGAGACATCATGTTTGTGAATGCCATGTTTGTCACTCCTGAAATTTCTGGTAGCATTATACAGGGTGAGCTGGATCCTTTTGGGAAATCAAT AAAGAGGAAGCCATCAAGCACGGGGTGGTGTCGTATATGTAAAGTCGACTGTGAAACAGTTGAAGGGCTTGAAGTGCATTCCCAGACAAAGGAGCATCAA AATATGGCATTGGATATGGTTGTGACCATCAAGGAAAATGCAAAGAAGCAAAAATTGGTGCAGAGTAACAATTCCCAACTAGATGATTCAAGCAACCTAA GAAATATCATCTCTGAGGGACATGGAGATTAG
AA sequence Show only first row Show all	>Lus10005872 pacid=23176949 polypeptide=Lus10005872 locus=Lus10005872.g ID=Lus10005872.BGIv1.0 annot-version=v1.0 MGFDNECIPNIQSLAGEYFCPVCRMLVYPHEALQSQCTHLYCKSCLAYVAATTQACPYDGYLVTEADSKPLLESNKSLAEAIGKIQVHCLYNRSGCTWQG PLSECTTHCSGCAFGNSAVVCNRCGVQIVHRQIHEHAQTCAGVQPQASNADGSQVSATSGAVASNDHRQVAVQAVVTSAQSHVSQSKTSLTSSQETILQS HLTTTTPAVTQASVPISEPLYQQHQYYQQYPGYFPYQQHYQQYYQQTAQQYQQPHAYVQPSNSQTLVSPQLPIQLQAQTQSQLQTLPEAQSQSQSQSQMQ VPIAVEPQIQAQINLQQQTQPTNHQLQYQAQSHPTPHGHLPPQSQPQAHGQALPVQSQQIVCQQLPSQSQNAASQIHNPAHSHPQHVPQIQSTTQVQAQM LVHHHLQLVQPPFASQPSQFRNPTHQAVAGHQSYVQPQSHHPMLPVNMYPQSVPLQQSQHPVQMQSQFPQPPTLLHHLQSHGMPPNLQPEGTFTSSSQVS NAVPDLQNPLHNQAHQTRLAVHQRPVPQPAQQPMHQQYVQNQQHFSGQPFGQNHKHQQIHHMQQNVHSHSQLRPQAFPKQFQESPQSYPQPQQNSSSLHV GHTQHAQDLAGRSVVPPVGVQDNPHGHLSGPSLRAMFVNKSHSLAEEGVGVDALSQGTAKPGSGALHIPAAKADVTIKSDSDLKPTNCETKSTGETKDAL GSQSAINLDPTTRRLQEESEEGGGGKKDVSDAVNKEDDSSVSVENEMLKNSLSKEGVSHEEQLSNSHDGNLVSQSSVFVHNKVTVHNKDGMSSLLHKPPT GLTSLQGPPAPSVGHSSQHRPHGSAHIPQVGQTLNPVPENVRCAGYNESHVPEILPGGFQGPKSALASGLSYDGPSQEPHTQGNSALSQGDIATFNNREG EMFPHLRPNPSIKSNATGMNMVPGHLFDSSSMLGLQNGRFGPFAGEHVHPFSQDAARRVADREQLEEDLKVFSRPSHLEAGLALKFRGPHGFRGDIVHRA PEDGPYRLTYDSGSNMETVASRAPSRHFPPYNHESAFRCTDVGEGPIGFHGKPFGRLDLARSHKDLLGPGAGYAQRHADSLGSRSPGRDYLSLRKFGPFP SLDDVHGRENKRFDGSSGRSFYDPRFPVWSSHSRRDEFHGLGSSRVSDHYRFSEFIGQDGMPSHLRGENFGPHKLPGHLRFTEQAGLGPIHGHLPVREFP ANGNFHAARFGEPGFRSSFTLNSFPGGERNYAVNCSRDIMFVNAMFVTPEISGSIIQGELDPFGKSIKRKPSSTGWCRICKVDCETVEGLEVHSQTKEHQ NMALDMVVTIKENAKKQKLVQSNNSQLDDSSNLRNIISEGHGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005872 [exp]	0	1
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10012798 [exp]	1.7	0.9669
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	4.5	0.9607
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	4.9	0.9631
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	5.3	0.9479
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	5.3	0.9635
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	6.7	0.9464
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	7.0	0.9570
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	7.3	0.9632
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014897 [exp]	8.1	0.9534
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	8.4	0.9551

Compare expression of checked genes

Lus10005872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.