Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07380 1143 / 0 Neutral/alkaline non-lysosomal ceramidase (.1) AT2G38010 1065 / 0 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT5G58980 1026 / 0 Neutral/alkaline non-lysosomal ceramidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021122 [exp] 1072 / 0 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10017188 [exp] 1034 / 0 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10001198 [exp] 536 / 0 AT1G07380 384 / 4e-129 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034564 [exp] 404 / 2e-134 AT5G58980 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034565 [exp] 347 / 3e-114 AT1G07380 356 / 5e-118 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021829 [exp] 125 / 1e-32 AT5G58980 125 / 2e-33 Neutral/alkaline non-lysosomal ceramidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040600 [exp] 1241 / 0 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 1231 / 0 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.016G110000 [exp] 1164 / 0 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.002G013300 [exp] 843 / 0 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10005873 pacid=23176938 polypeptide=Lus10005873 locus=Lus10005873.g ID=Lus10005873.BGIv1.0 annot-version=v1.0 ATGGGTTTACTGTCAAGTTCGAATCTTGAAGTAGGGAGATCGTTGTTCTGGGTTTCTCTAATTGTGTTGGTGCTTGCGAGTTGCAGTAGAGTGGCGTTCT CCGATTCCAAATACTTGGTCGGGCTGGGAAGCTACGACATCACTGGACCTGCTGCTGATGTCAATATGATGGGATATGCTATGATGGACCAGACCACCTC CGGCATTCACTTCAGGTTGCGAGCTCGGACATTCATCGTTGCTGAACCAGGTAAGAACAGGGTCGTGTTTGTTAACCTGGATGCTTGTATGGCCTCACAG ATTGTGACTATCAAAGTCATTGAGAGGTTGAAAGCCAGGTATGGAGAACTGTACACTGAAAAGAATGTTGCTATAAGCGGGATTCACACACATGCTGGCC CTGCAGGGTATCTCCAGTATGTTGTGTATATTGTGACATCTCTAGGGTTTGTCCGTCAGTCATTTGATGCCCTTGTAGATGGCATTGAGCAAAGCATTAT TCAAGCCCATGAAAATCTTCGACCTGGTTCGATATATGTGAATAAGGGGGAAGTTATGGATGCTGGTGCAAACCGCAGCCCGAGTGCCTATCTAAATAAC CCAGCAGAAGAGCGCAGCAAATACAAATATGATGTTGACAAAGAAATGACGCTTCTGAAGTTTGTGGATGATGAATGGGGTCCAATCGGTAGTTTCAATT GGTTTGCAACTCATGGAACTTCTATGACTAACAAGAACTCTTTGATAAGTGGTGATAATAAGGGTGCTGCTGCTCGATTCATGGAAGACTGGTTTGATCA GAGTAGTGGTGCTAGTTCTGGTTCTGTTGAAAGTGCAGCTGAAGGAATTCCAAGGAGAGTTTCAAGTATCATTCCAGATGTGCACAATTACCATCGCGAA CACGAGCTGCTGGAGCTTGCTGCATCCTATGAATCTCCTCCTGGTAAACCGGCTACGAAGATTCTGAGTGTTGCACAACGGGTCAGGAGTGCTCTCAGGA AGGCAGACAAACCAAGTTTCGTGTCTGCCTTTTGCCAGTCAAATTGTGGTGATGTGAGTCCTAATGTACTGGGAGCTTTCTGCACCGACACTGGGGTACC ATGTGACTTTAATCACAGTACATGTGGTGGGAGGAATGAACTGTGTGTAGCCCGGGGACCTGGTTACCCCGATGAGTTTGAAAGTACACGTATTATTGGA GACAGACAATTCAGGAAAGCAGTGGAGCTTTTCAACAAAGCAACTGAGGAGTTGACAGGAGAGATTGACTATCGCCACACTTTTGTCGACTTATCTCAGC TTGAAGTGACTGTACCTAAGCAAGGTGGAGGTACTGAGACAGTGAAGACATGTCCAGCTGCAATGGGATTCGCATTTGCTGCTGGAACTACAGATGGACC TGGAGCTTTTGATTTTAAGCAGGGAGATGATAAGGGGAATGCGTTCTGGAAGTTGGTCGGGGGAATGCTGAAGTCCCCAGCAGCAGAACAGATTAGTTGT CAGCACCCAAAGCCTATCTTACTTGATACTGGTGAAATGACTCTTCCGTATCAGTGGGCACCTTCGGTTCTTCCAATCCAAATTCTTCGTGTGGGTCAGC TAGTTATTCTCACTGTTCCCGGAGAATTCACAACAATGGCTGGAAGACGCCTACGGGATGCTGTGGAGCAAGTGCTGACAAGTAACAAGAATGAAAACGT CCACATTGTAATAGCTGGATTGACTAATACCTACTCCCAATACATTTCTACCATTGAAGAATACGAAGTACAGAGATACGAGGGTGCATCTACTCTATAT GGTCCACACACATTGAGTGCATACATTCAAGAATTCCAAAAGCTCGCAGGAGCTATAGTCCAGGATGAGCAGGTGGAGCCTGGTCCTCAGCCTCCGGATC TGCTCAGCAAGCAAATCAGCATGCTTACACCTGTTCTGATGGATACTACCCCAATCGGCACGCATTTTGGTGATTGCAGCTCAGACGTCCCCAAAAACGC CACGTACAAAAGGGGGGACAAGGTAGCAGTAGTGTTCTGGTCGGCTTGCCCGAGGAACGATCTGATGACAGAAGGAACGTTTGCTCTGGTAGAGATTCTT CAAGGCGCAGATACGTGGGTCCCTGCCTATGATGACGACGATTTCTGCCTGAGGTTCATATGGTCAAGACCAGCAAAGCTGAGTTCTCGCAGCCATGCTA CCATAGAGTGGAGGATCCCACAGTCGGCTACTTCAGGCGTGTATAGGATCAGACATTTTGGTGCTGCAAAGGCACTTCTTGGCTCAGTTCGTCATTTCAC TGGGTCCTCCAGTGCTTTTGTTGTAACATGA
AA sequence Show only first row Show all	>Lus10005873 pacid=23176938 polypeptide=Lus10005873 locus=Lus10005873.g ID=Lus10005873.BGIv1.0 annot-version=v1.0 MGLLSSSNLEVGRSLFWVSLIVLVLASCSRVAFSDSKYLVGLGSYDITGPAADVNMMGYAMMDQTTSGIHFRLRARTFIVAEPGKNRVVFVNLDACMASQ IVTIKVIERLKARYGELYTEKNVAISGIHTHAGPAGYLQYVVYIVTSLGFVRQSFDALVDGIEQSIIQAHENLRPGSIYVNKGEVMDAGANRSPSAYLNN PAEERSKYKYDVDKEMTLLKFVDDEWGPIGSFNWFATHGTSMTNKNSLISGDNKGAAARFMEDWFDQSSGASSGSVESAAEGIPRRVSSIIPDVHNYHRE HELLELAASYESPPGKPATKILSVAQRVRSALRKADKPSFVSAFCQSNCGDVSPNVLGAFCTDTGVPCDFNHSTCGGRNELCVARGPGYPDEFESTRIIG DRQFRKAVELFNKATEELTGEIDYRHTFVDLSQLEVTVPKQGGGTETVKTCPAAMGFAFAAGTTDGPGAFDFKQGDDKGNAFWKLVGGMLKSPAAEQISC QHPKPILLDTGEMTLPYQWAPSVLPIQILRVGQLVILTVPGEFTTMAGRRLRDAVEQVLTSNKNENVHIVIAGLTNTYSQYISTIEEYEVQRYEGASTLY GPHTLSAYIQEFQKLAGAIVQDEQVEPGPQPPDLLSKQISMLTPVLMDTTPIGTHFGDCSSDVPKNATYKRGDKVAVVFWSACPRNDLMTEGTFALVEIL QGADTWVPAYDDDDFCLRFIWSRPAKLSSRSHATIEWRIPQSATSGVYRIRHFGAAKALLGSVRHFTGSSSAFVVT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	0	1
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	1.0	0.8120
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	4.2	0.6935
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	15.5	0.6547
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	17.5	0.6656
AT3G57890			Tubulin binding cofactor C dom...		Lus10012025 [exp]	19.0	0.7231
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041737 [exp]	19.6	0.6874
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	19.9	0.6666
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	22.1	0.7269
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	22.2	0.7211
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	24.7	0.6929

Compare expression of checked genes

Lus10005873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.