Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29570 387 / 7e-138 ATPCNA2, PCNA2 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) AT1G07370 383 / 5e-136 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001197 [exp] 276 / 1e-94 AT2G29570 343 / 1e-120 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10038360 [exp] 99 / 1e-26 AT2G29570 109 / 9e-31 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Lus10038359 [exp] 0 / 1 AT2G29570 70 / 3e-21 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247700 [exp] 396 / 3e-141 AT2G29570 475 / 4e-172 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Potri.009G040900 [exp] 386 / 3e-137 AT2G29570 484 / 9e-176 A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, proliferating cell nuclear antigen 2 (.1) Potri.010G193950 [exp] 53 / 2e-09 AT1G07370 57 / 3e-11 proliferating cellular nuclear antigen 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [flax] [poplar] DNA_clamp PF00705 [flax] [poplar] PCNA_N Proliferating cell nuclear antigen, N-terminal domain CL0060 [flax] [poplar] DNA_clamp PF02747 [flax] [poplar] PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005874 pacid=23176916 polypeptide=Lus10005874 locus=Lus10005874.g ID=Lus10005874.BGIv1.0 annot-version=v1.0 ATGCTGGAGCTTCGGCTAGTGCAGGGATCCCTTCTGAAGAAAGTGATGGACGCCATCAAAGACCTCGTCAACGACGCCAACTTCGATTGTTCCTCCACCT CCTTCGCACTCCAAGCCATGGACTCAAGCCACGTTGCCCTTGTCGCTCTCCTCCTCCGAGCTGAGGGATTTGAGCACTTCCGCTGCGACCGCAACATCTC CATGGGGATGAACCTTGGCAATATGGCTAAGATGCTCAAGTGTGCTGGAAACGATGACATAATCACTATCAAGGGTGATGACGGCAGTGACACTGTCACT TTCATGTTTGAGAGTCCCACTCAAGACAAAATTTCAGACTTTGAGATGAAATTGATGGACATCGACAGTGAGCACCTGGGAATCCCTGATGCAGAGTACC AGGCTATTGTCCGAATGCCTTCAGCGGAGTTCACTAGAATTTGCAAAGATCTTGCCACTATTGGTGACACTGTTGTCATATCCGTGACAAAGGAAGGTGT GAAATTCTCTACACGGGGTGATATAGGAAGTGCAAATGTTGTTCTGAGGCAGAACACCACTGTTGACAAGCCAGAGGAAGCAACAATCATAGAGATGAAT GAGCCTGTATCCCTGACGAGGATGAAGAGGAGAGCAAGCCATAAGAAGCATGATACTCGTCTTTATGTTTCTTTTTCTTGTCTTGGACAGACGCAGACTT TTATCTTATGTTGTTCTTGCTAG
AA sequence Show only first row Show all	>Lus10005874 pacid=23176916 polypeptide=Lus10005874 locus=Lus10005874.g ID=Lus10005874.BGIv1.0 annot-version=v1.0 MLELRLVQGSLLKKVMDAIKDLVNDANFDCSSTSFALQAMDSSHVALVALLLRAEGFEHFRCDRNISMGMNLGNMAKMLKCAGNDDIITIKGDDGSDTVT FMFESPTQDKISDFEMKLMDIDSEHLGIPDAEYQAIVRMPSAEFTRICKDLATIGDTVVISVTKEGVKFSTRGDIGSANVVLRQNTTVDKPEEATIIEMN EPVSLTRMKRRASHKKHDTRLYVSFSCLGQTQTFILCCSC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	0	1
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	1.0	0.9553
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	1.4	0.9508
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	3.5	0.9506
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	3.9	0.9495
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	4.0	0.9501
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	6.0	0.9372
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	6.2	0.9112
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	8.8	0.9488
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	10.5	0.9360
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	10.6	0.9449

Compare expression of checked genes

Lus10005874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.