Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28660 108 / 1e-27 Chloroplast-targeted copper chaperone protein (.1) AT2G37390 101 / 4e-25 NAKR2 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) AT5G02600 100 / 4e-24 NPCC6, NAKR1 nuclear-enriched phloem companion cell gene 6, SODIUM POTASSIUM ROOT DEFECTIVE 1, Heavy metal transport/detoxification superfamily protein (.1.2) AT3G53530 94 / 2e-22 NAKR3 SODIUM POTASSIUM ROOT DEFECTIVE 3, Chloroplast-targeted copper chaperone protein (.1.2) AT3G24450 84 / 9e-20 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 65 / 5e-13 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT3G56240 62 / 8e-12 ATX1, CCH copper chaperone (.1) AT5G27690 65 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 62 / 2e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G05365 56 / 4e-10 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040870 [exp] 444 / 3e-158 AT2G28660 110 / 2e-28 Chloroplast-targeted copper chaperone protein (.1) Lus10024435 [exp] 97 / 4e-23 AT2G37390 144 / 2e-41 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10025294 [exp] 96 / 2e-22 AT2G37390 141 / 3e-40 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Lus10017730 [exp] 69 / 3e-14 AT3G24450 134 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1) Lus10043444 [exp] 62 / 8e-12 AT1G66240 127 / 4e-39 homolog of anti-oxidant 1 (.1.2.3) Lus10028859 [exp] 62 / 1e-11 AT1G66240 125 / 8e-38 homolog of anti-oxidant 1 (.1.2.3) Lus10032445 [exp] 63 / 5e-11 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 58 / 8e-10 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10033250 [exp] 56 / 6e-09 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234700 [exp] 146 / 5e-42 AT2G37390 114 / 2e-30 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.006G213900 [exp] 112 / 9e-29 AT2G37390 127 / 2e-35 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.016G080400 [exp] 107 / 5e-27 AT2G37390 133 / 2e-37 SODIUM POTASSIUM ROOT DEFECTIVE 2, Chloroplast-targeted copper chaperone protein (.1.2) Potri.018G076400 [exp] 79 / 8e-18 AT3G24450 151 / 4e-48 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G236500 [exp] 64 / 7e-13 AT1G66240 129 / 1e-40 homolog of anti-oxidant 1 (.1.2.3) Potri.008G023800 [exp] 63 / 1e-12 AT1G66240 124 / 7e-39 homolog of anti-oxidant 1 (.1.2.3) Potri.011G065600 [exp] 60 / 5e-11 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 60 / 8e-11 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 59 / 1e-09 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 56 / 2e-09 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10005875 pacid=23176931 polypeptide=Lus10005875 locus=Lus10005875.g ID=Lus10005875.BGIv1.0 annot-version=v1.0 ATGGACATCTTCTGCAAATCCCCTTCTTCCACCGCCATCTGCTCCAGCCTCGACCACCGCTCCATGGTTCGCCACCATTACCACTCCGCACCTTCCACTC CCAAGCTGACACCCATCTTCGCCCCATGTTCTTCTTCCCACGATCTCATTCCCTCCGAAAATCTCCGCCGCCGTAGCACCTCCGCCGTCGCCGTTACCGA CCTCTACAAGAAACCCTCCTCTGCTTCCGATAAGCCAAAACAGAGCACCTCCTCCTCCGACCTCCCGCTGCGCAGGAGGAGCTCCGCCGACGTTGCAGAC TTCCTCCGCCTCCGTCACCGCCCTCACCACTCCCGCTCCGAATCCTCCACTCATCTCCTCACCCACGATGCACCGGCGGCGGCTCCGCTGCCATATGCCA ATTGGGTTTCCGGCGGTCAACAAAACCGCAACAAAATCAAGCTGAATAGCTCCGTCTATGATTACGCACCCGTCCGTGAAATCGAACGCCGCCATTCCCC CGCCGTTGCTGCCTCCGGTGACTACCTCCCGAAACGAACCGAATTGATCGGTTGGGTGAGATCTGATTCGTCTCACAAAAACGACCCCGTTTCGGAAATT ACTCCGGCGAATAATAATAATACTCAGCTAGTCAAATCCCAAGATTGCCCTCCGGTCCGGAAATCTTCTTCCCCCGTCCGTCCTCCCGACGTTCAGGTGG TGGAGTTGAGGGTGTCGATCCATTGCAAAGGATGCGAAGGGAAAGTGAGGAAGCACATCTCCAAAATGGAAGGGGTCACGTCGTTCAGCATTGATGTGGC GACGAAGAAGGTTACAGTGAAGGGGAACGTGACAGCCATGGGTGTGCTGTCCAGCATCTCCAAAGTGAAGAGTGCACAGCTCTGGTCCACGTCGGATTTG CCGCCGCGGCCTCCGCCGGCCACTGCTCCGACATGGTCAACTTAG
AA sequence Show only first row Show all	>Lus10005875 pacid=23176931 polypeptide=Lus10005875 locus=Lus10005875.g ID=Lus10005875.BGIv1.0 annot-version=v1.0 MDIFCKSPSSTAICSSLDHRSMVRHHYHSAPSTPKLTPIFAPCSSSHDLIPSENLRRRSTSAVAVTDLYKKPSSASDKPKQSTSSSDLPLRRRSSADVAD FLRLRHRPHHSRSESSTHLLTHDAPAAAPLPYANWVSGGQQNRNKIKLNSSVYDYAPVREIERRHSPAVAASGDYLPKRTELIGWVRSDSSHKNDPVSEI TPANNNNTQLVKSQDCPPVRKSSSPVRPPDVQVVELRVSIHCKGCEGKVRKHISKMEGVTSFSIDVATKKVTVKGNVTAMGVLSSISKVKSAQLWSTSDL PPRPPPATAPTWST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	2.4	0.9245
AT2G28660			Chloroplast-targeted copper ch...		Lus10040870 [exp]	3.9	0.8903
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	6.6	0.8766
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	10.1	0.8929
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	13.1	0.9067
AT2G01720			Ribophorin I (.1)		Lus10023524 [exp]	13.4	0.8668
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	16.4	0.8717
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	17.7	0.8364
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	17.9	0.8533
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	18.2	0.8652

Compare expression of checked genes

Lus10005875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.