Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07740 258 / 1e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 119 / 4e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 118 / 1e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63070 118 / 1e-30 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 117 / 3e-30 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 116 / 6e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 115 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 114 / 1e-29 unknown protein AT1G12775 114 / 4e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 113 / 8e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040869 [exp] 386 / 1e-134 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 121 / 1e-31 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10039056 [exp] 120 / 3e-31 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 116 / 8e-30 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 112 / 2e-29 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 115 / 3e-29 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 113 / 9e-29 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005303 [exp] 113 / 1e-28 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002675 [exp] 112 / 2e-28 AT4G01400 570 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204100 [exp] 295 / 3e-99 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G020501 [exp] 168 / 3e-53 AT1G07740 218 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 134 / 3e-36 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 122 / 3e-32 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 119 / 5e-31 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 117 / 3e-30 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G075900 [exp] 117 / 4e-30 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 115 / 7e-30 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G090400 [exp] 115 / 1e-29 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 114 / 3e-29 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005876 pacid=23176947 polypeptide=Lus10005876 locus=Lus10005876.g ID=Lus10005876.BGIv1.0 annot-version=v1.0 ATGATTTCGAAAGGGAAGCGACCGAACGAGGTGACTTATGCGTTGTTAATGGAAGGATTATGCTCCATGGGAGAGCATAAGGAGGCTAAGAAGTTGATGT TCGACATGGAATATCGAGGGTGCAAGCCGAAAGTTTTGAACTTTGGGATCTTGATGAGCGATCTAGGGAAGCGAGGCAAGATCGAGGAAGCGAAGGCTTT GCTTGTCGAAATGAAGAAGAAGAGGAAGTTGAAGCCGGATGTTGTAACTTATAATATACTGGTGAATTGTTTGTGTAAAGAAGGGAGGGTTTCGGAGGCG TATAAGGTGTTGCTGGAGATGGAGATGGGAGGGTGCGAGGCGAATGCAGTGACGTATAGGATGCTGGTTGATGGATTTTGCAGGGAAGGGGATTTCGAAG GTGGGTTGAGAGTGTTGACTGCGATGTTGAGTAGTAAGCATTTCCCGAGAACTGAGACGTTTGTGTGTATGGTTGGGGGATTGCTTGAATCTGGGAATGT TGAAGGAGCTGGGTTTGTGTTGGAGGAGATGCGTAAGAGGAAATTGGCATTGGGTTGGGATGGCTGGGAGGATCTGGTGAAGGGTTCGTCTGACAGTGAC GAAAAATTGAGGGAACTTGTGAATCGAGTGATTGAGGGATACAAATGA
AA sequence Show only first row Show all	>Lus10005876 pacid=23176947 polypeptide=Lus10005876 locus=Lus10005876.g ID=Lus10005876.BGIv1.0 annot-version=v1.0 MISKGKRPNEVTYALLMEGLCSMGEHKEAKKLMFDMEYRGCKPKVLNFGILMSDLGKRGKIEEAKALLVEMKKKRKLKPDVVTYNILVNCLCKEGRVSEA YKVLLEMEMGGCEANAVTYRMLVDGFCREGDFEGGLRVLTAMLSSKHFPRTETFVCMVGGLLESGNVEGAGFVLEEMRKRKLALGWDGWEDLVKGSSDSD EKLRELVNRVIEGYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	0	1
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	3.7	0.7974
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10022131 [exp]	4.2	0.7461
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	4.5	0.7922
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10039570 [exp]	4.6	0.7572
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	7.7	0.7281
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	9.0	0.7426
AT3G53540			unknown protein		Lus10025295 [exp]	9.2	0.7484
AT1G71080			RNA polymerase II transcriptio...		Lus10042948 [exp]	12.5	0.7320
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	13.0	0.7458
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10012579 [exp]	13.4	0.7212

Compare expression of checked genes

Lus10005876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.