Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07740 212 / 3e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 98 / 3e-23 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G13150 96 / 1e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G14580 84 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13160 82 / 9e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 79 / 8e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 79 / 1e-16 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 77 / 6e-16 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G21222 75 / 3e-15 protein kinase family protein (.1) AT1G52640 73 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040869 [exp] 417 / 4e-146 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005989 [exp] 97 / 6e-23 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030222 [exp] 95 / 8e-23 AT5G16420 377 / 1e-128 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026218 [exp] 97 / 1e-22 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 96 / 1e-22 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 91 / 1e-20 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021645 [exp] 80 / 5e-17 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005540 [exp] 80 / 7e-17 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 79 / 1e-16 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204100 [exp] 229 / 1e-72 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G108500 [exp] 95 / 3e-22 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 92 / 5e-21 AT4G01400 576 / 0.0 unknown protein Potri.012G031600 [exp] 87 / 2e-19 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G030000 [exp] 82 / 6e-18 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 80 / 4e-17 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 79 / 7e-17 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G081700 [exp] 79 / 8e-17 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.011G032400 [exp] 79 / 9e-17 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 79 / 1e-16 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10005877 pacid=23176902 polypeptide=Lus10005877 locus=Lus10005877.g ID=Lus10005877.BGIv1.0 annot-version=v1.0 ATGCTTCCAATTTCAAGAGCAATCAAATGGCACACCCAATCCGACTCTTCCTGTGCTGTTAGATTGTACAGAGCTTTCCATTCCCACAAACCAAAATCCA AAACCCAAAATCCTGACAATTCACAGAGCCGGCGGCAGCGGCGACACCGGAAAAACATACCATTCGTCACCGCCGTGAAGGAAACCGGAGAACCAGAAGA CGCATTGGCGCTCTTTAGCGAGTACACCCAAATGGGGATCAAACACGACTACCCTTCGTACTCAGCTCTCATTTACAAGCTCGCTCGCTCTCGCAACTTC CAAGCCGTCGAGGATGTTCTCGGTCAATTGCAAGCTAGTAACATTCGATGTGGGAGTGAGAAACTCTTCATTGCTCTATTCGATCATTACGGGAAATCCG GGTTGTCCGATAATGCAGTCAAGCTGTTCGAGAAAATGCCAAAGTTCAACTGCGAAAGAACGTCTCAGTCTTTTAACGGTCTATTGAACGTTCTTGTTGA CAGCGACCGTTTGGAAGAAGCAAACAAGCTGTTTGAAAAGTCCAACAAGATGAGGATCCGTCTGAATTCAGTGCCGTTCAATATAATGATCAAAGGATGG CTAGGAAAAAAAGATTGGGATCACGCACGCCAGGTGTTCGACGAAATGCTCGAGAGAAAAATCGAACCGAGCGTGGTCACTAATCGAACCGAGCGTGGTC ACCCCCCCCAGCCTCATCGGCTATCTATCTCGAAAGGGTGA
AA sequence Show only first row Show all	>Lus10005877 pacid=23176902 polypeptide=Lus10005877 locus=Lus10005877.g ID=Lus10005877.BGIv1.0 annot-version=v1.0 MLPISRAIKWHTQSDSSCAVRLYRAFHSHKPKSKTQNPDNSQSRRQRRHRKNIPFVTAVKETGEPEDALALFSEYTQMGIKHDYPSYSALIYKLARSRNF QAVEDVLGQLQASNIRCGSEKLFIALFDHYGKSGLSDNAVKLFEKMPKFNCERTSQSFNGLLNVLVDSDRLEEANKLFEKSNKMRIRLNSVPFNIMIKGW LGKKDWDHARQVFDEMLERKIEPSVVTNRTERGHPPQPHRLSISKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	0	1
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	2.6	0.8858
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10004892 [exp]	5.8	0.8257
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	9.2	0.8571
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	10.5	0.8383
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	11.4	0.8677
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	12.5	0.8662
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	15.1	0.8512
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10007683 [exp]	15.6	0.7680
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	16.7	0.8416
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	17.1	0.8588

Compare expression of checked genes

Lus10005877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.