Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 390 / 7e-131 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G42250 321 / 7e-104 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT4G15350 318 / 5e-103 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT5G07990 318 / 7e-103 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G20950 313 / 1e-100 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT2G14100 312 / 1e-100 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1) AT3G20940 308 / 7e-99 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT1G50520 307 / 2e-98 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT3G20140 306 / 5e-98 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT2G27000 303 / 6e-97 CYP705A8 "cytochrome P450, family 705, subfamily A, polypeptide 8", cytochrome P450, family 705, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040868 [exp] 859 / 0 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 459 / 9e-158 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10027798 [exp] 317 / 1e-104 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021158 [exp] 305 / 1e-97 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 300 / 8e-96 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10032223 [exp] 298 / 6e-95 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10023827 [exp] 295 / 1e-93 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10017961 [exp] 292 / 1e-92 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012767 [exp] 291 / 3e-92 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037201 [exp] 552 / 0 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 551 / 0 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 537 / 0 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G049800 [exp] 471 / 2e-162 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 435 / 3e-148 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G052600 [exp] 335 / 2e-109 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.007G084800 [exp] 330 / 1e-107 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083000 [exp] 327 / 1e-106 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G082900 [exp] 327 / 2e-106 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 326 / 3e-106 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10005878 pacid=23176952 polypeptide=Lus10005878 locus=Lus10005878.g ID=Lus10005878.BGIv1.0 annot-version=v1.0 ATGATCGTCGAGCTTCTCTCCCTCCTAGCCATACTCGCCTTCTTCGCCCTAACCCTAGCTCGAAATGCACGAAACAACAAAGACCTCCCTCCGGGACCCA TGTCCCTTCCGGTCATCGGCCATCTCCACCTCATCGGACCACTAATCCACCACACTTTCCACGACCTCGCCTCACGCTATGGCCCGCTCATGAACATCAA GCTCGGCTCCATCTCGGCCATCGTGGTCTCCTCTCCGGACCTGGCTCGCGAATTCCTCAAAACCCACGAGATCAACTTCTCGATGCGGGCCAGCACCATT GCCATCGACTACCTCACCTACAACAACATCTCCTTCGCCTTCGCACCCTACGGGGCTTACTGGAAGTTCATCAAGAAGATAAGCACGTTCGAGCTCCTTG GTAACCGAATGTTGAACCAGTTCCGTCCCATCCGTACCGAGGAGCTCCACAGTCTGCTGAAATTTCTGGGACAGAAGTCCCAAAATTGTGAAAAAGTCAA CCTCAGCCAGGAGCTGCTGAGGTTTGCCAACAACGTTATCTGCCAGATGATGTTAGGAATGCGTGCCTCAGGGACTGATGGGCAGGCTGAGGTGGCTAGG GGGCTGGCCCGCGATGTGACACAGATATTTGGAGAGTTCAACGTGTCGGATTTCGTGTGGTTCCTTAAAAAATGGGACGTCCAAGGGTTCAAGAGGAGGT CCGAGGATATACGGCGGAGGTTTGATAACCTTTTGGAAGGGATTGTGTCGGAGAGGGAAAAGGTGAGGGCGGAGGAGCGGCGGAGGAGTGGCGCCGGCGG GAAAAAGAGGGAGGCGGTGGATTTCTTGGATCTGATGTTGGACGTCATTGAGGACGAGGATGCGGAGATCAAGTTGACTAGAGATCACGTTAAAGCATTG GTCCTGGATTTCTTTACAGCAGGAACAGACACGTCAGCGGCGTCGCTAGAGTGGGCCCTATCGGAACTAATCAACCACCCAAAGGTTCTCCGAAAGGCTC GGGAAGAGATAGACCGGGTCGTCGGGGAAACCCGGCTGGTGGAGGAATCCGACGGGCCGAATTTGGTATACATCCACGCCGTGATCAAGGAGGCGTTCCG CCTCCACCCGTCTATTCCGATGATCACTAGGAAATGCGTGCAGGAGTGCGAGATCGGCGGGTACCGGATCCCGCTCAACTCGATGTTGTTCGTCAACATG TGGTCGATCGGGCGGAACCCGAAGTACTGGGACGACCCGTTGGAATTCCGACCCGAGCGGTTTTTGGACAGCCAGGTGGACATGAAAGGGCAGCACTACG AGCTGCTTCCGTTCGGGAGCGGGAGGAGGATCTGCGCCGGGATGGCGCTGGCTCTACAGGAGCTGCCGGCGGCACTAGCGGCGGTGATCCAGTGCTTCGA TTTCGAGGTGGTGGGCCCCGGGGGAGAGACTGTGAAGGGGGAGATGCCGGTTGATATGTCGGAGCGGCAAGGGTTGACGGTGCCGAAAGCGACGGATCTG GTGTGCGTGCCGGTGGCGCGTGACGGGATTAATCTGGAGAGTTTGTTGTCGTCATCTGGTTAA
AA sequence Show only first row Show all	>Lus10005878 pacid=23176952 polypeptide=Lus10005878 locus=Lus10005878.g ID=Lus10005878.BGIv1.0 annot-version=v1.0 MIVELLSLLAILAFFALTLARNARNNKDLPPGPMSLPVIGHLHLIGPLIHHTFHDLASRYGPLMNIKLGSISAIVVSSPDLAREFLKTHEINFSMRASTI AIDYLTYNNISFAFAPYGAYWKFIKKISTFELLGNRMLNQFRPIRTEELHSLLKFLGQKSQNCEKVNLSQELLRFANNVICQMMLGMRASGTDGQAEVAR GLARDVTQIFGEFNVSDFVWFLKKWDVQGFKRRSEDIRRRFDNLLEGIVSEREKVRAEERRRSGAGGKKREAVDFLDLMLDVIEDEDAEIKLTRDHVKAL VLDFFTAGTDTSAASLEWALSELINHPKVLRKAREEIDRVVGETRLVEESDGPNLVYIHAVIKEAFRLHPSIPMITRKCVQECEIGGYRIPLNSMLFVNM WSIGRNPKYWDDPLEFRPERFLDSQVDMKGQHYELLPFGSGRRICAGMALALQELPAALAAVIQCFDFEVVGPGGETVKGEMPVDMSERQGLTVPKATDL VCVPVARDGINLESLLSSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	1.4	0.9239
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Lus10036960 [exp]	2.0	0.8533
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	2.4	0.8643
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	2.8	0.9162
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	5.3	0.8356
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	7.1	0.8439
					Lus10004594 [exp]	8.9	0.8064
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	8.9	0.8342
AT4G13150			unknown protein		Lus10038175 [exp]	10.4	0.8373
AT5G05270			Chalcone-flavanone isomerase f...		Lus10012878 [exp]	10.7	0.7606

Compare expression of checked genes

Lus10005878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.