Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28680 518 / 0 RmlC-like cupins superfamily protein (.1) AT1G07750 506 / 0 RmlC-like cupins superfamily protein (.1) AT1G03890 113 / 9e-28 RmlC-like cupins superfamily protein (.1) AT1G03880 108 / 5e-26 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT5G44120 108 / 7e-26 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT4G28520 81 / 2e-16 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28490 62 / 2e-10 RmlC-like cupins superfamily protein (.1) AT3G22640 57 / 9e-09 PAP85 cupin family protein (.1) AT2G18540 57 / 1e-08 RmlC-like cupins superfamily protein (.1) AT4G36700 45 / 4e-05 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040867 [exp] 673 / 0 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10015219 [exp] 564 / 0 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005438 [exp] 563 / 0 AT1G07750 569 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10011816 [exp] 132 / 1e-34 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 132 / 2e-34 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 121 / 2e-30 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 118 / 2e-29 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 117 / 4e-29 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 115 / 1e-28 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102900 [exp] 533 / 0 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 532 / 0 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G402600 [exp] 303 / 2e-101 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1) Potri.019G004500 [exp] 139 / 5e-37 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 137 / 2e-36 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 137 / 4e-36 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 134 / 3e-35 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 134 / 4e-35 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 125 / 4e-32 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 111 / 5e-27 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10005880 pacid=23176907 polypeptide=Lus10005880 locus=Lus10005880.g ID=Lus10005880.BGIv1.0 annot-version=v1.0 ATGGATGTTGATCTGATGCCCAAGTGGCCGAAGAATGTGTACGCAGGCGACGGCGGCTCCTACCACGCCTGGTCCCCCGACGACCTAGTCATGCTCCGCC TCGGGAACATCGGAGCCGCCAAGCTCTACCTCCGGAAGCACGGATTATCCCTCCCTCATTACTCCGATTCCTCCAAGGTCGTCTACGTTCTCCAAGGAAA CGGTGTGGCGGGGCTTGTTCTACCGGAGAAGGACGAGAAGGTGGTCGGAATCAAGAAGGGCGACGCAATCGCCCTCCCATTCGGCACGGTGACGTGGTGG TACAACGAGGAAGACACCGAGCTAGAAATTCTCTTCTTAGGAGACACCTCAAAGGGACACAATGCAGGTTCCTTCACTGATTTCTACCTAACAGGCTCCA ACGGCATCTTCAACGGCTTCTCCACCGAATTCGTATCCCGAGCGTGGAATCTAGAAGAAACCTCCGTAAATTCCCTTGTAAGATCCCAATCGGAAAGAAG GATAGTCATGCGGGATGGCGGCATTAAGTTCACCGATCCGGTGAAGGCGGATCGTGGTAGACTGGTGTCGAACTGCGAGGAAGCACCGCTTGATGTCGAC ATCAACAGAGGAGGCAGGGTGGTTGTGCTGACCACCAAGAACTTGCCCTTGGTTGCCGAGATTGGGATCGGTGCTGATTTGGTGAAGCTTGACGGTGGGG CGATGTGCTCCCCTGGCTTTTCTAGCGACTCTGCATTGCAGGTGACTTACATTGTGAGCGGGAGTGGTAGGATTCAAATTGTGGGTGTGGATGGGAAGAG GGTGTTGGATACGATTGTCGAGGCGGGGCAGTTGTTCGTGGTTCCGAGATTCTTTGTCGTTTCGAAGATCGGGGGTCCTGGCGGGATGTCGTGGTTCTCC ATCATCACCACCCCTGACCCAATATTCACTCACTTAGCAGGAAGGACCTCGGTGTGGAAGACATTGTCGCCGGCAGTGCTGGAGGCGTCGTTCAATGTGT CGTCGGAGGTTGAGAATATGTTCAGAAATAAGAGGGTTTCCGACGAGATTTTCTTCCCACCGCCATCGAAATGA
AA sequence Show only first row Show all	>Lus10005880 pacid=23176907 polypeptide=Lus10005880 locus=Lus10005880.g ID=Lus10005880.BGIv1.0 annot-version=v1.0 MDVDLMPKWPKNVYAGDGGSYHAWSPDDLVMLRLGNIGAAKLYLRKHGLSLPHYSDSSKVVYVLQGNGVAGLVLPEKDEKVVGIKKGDAIALPFGTVTWW YNEEDTELEILFLGDTSKGHNAGSFTDFYLTGSNGIFNGFSTEFVSRAWNLEETSVNSLVRSQSERRIVMRDGGIKFTDPVKADRGRLVSNCEEAPLDVD INRGGRVVVLTTKNLPLVAEIGIGADLVKLDGGAMCSPGFSSDSALQVTYIVSGSGRIQIVGVDGKRVLDTIVEAGQLFVVPRFFVVSKIGGPGGMSWFS IITTPDPIFTHLAGRTSVWKTLSPAVLEASFNVSSEVENMFRNKRVSDEIFFPPPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	3.2	0.8417
AT3G11590			unknown protein		Lus10021324 [exp]	4.2	0.8103
AT2G21180			unknown protein		Lus10026283 [exp]	5.3	0.7755
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	6.9	0.7736
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	6.9	0.8068
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	7.1	0.8066
AT3G55420			unknown protein		Lus10040295 [exp]	9.6	0.8092
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026117 [exp]	12.0	0.7628
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	17.5	0.7561
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	17.7	0.7505

Compare expression of checked genes

Lus10005880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.