Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59740 572 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT3G46180 531 / 0 UTR5, ATUTR5 UDP-galactose transporter 5 (.1) AT2G02810 120 / 2e-31 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 118 / 2e-30 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT4G23010 77 / 1e-15 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT1G12600 76 / 5e-15 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040866 [exp] 575 / 0 AT5G59740 479 / 8e-172 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 124 / 2e-32 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10012848 [exp] 102 / 1e-23 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1) Lus10006337 [exp] 77 / 1e-15 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 77 / 2e-15 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 73 / 3e-14 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 70 / 4e-13 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234800 [exp] 568 / 0 AT5G59740 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.016G139100 [exp] 110 / 2e-27 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 105 / 1e-25 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.014G077500 [exp] 69 / 1e-12 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.001G111000 [exp] 67 / 3e-12 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.003G121000 [exp] 67 / 3e-12 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10005881 pacid=23176928 polypeptide=Lus10005881 locus=Lus10005881.g ID=Lus10005881.BGIv1.0 annot-version=v1.0 ATGGCTGATTCGGCGTCGTTAAGTGCTGTTAAGGAGAACAAGCTATGGAAAGGCGTCTTCGCCGTCGGAGGAATCATGATCACTCTCGTGATCTACGGTG TTCTACAGGAGAAGATCATGAGAGTTCCATACGGGGTGAATAACGAGTATTTTAAGTACTCTCTTTTCCTTGTATTCTGCAATCGAGTTACGACATCTGC TATATCGGCTATTTCTCTGGTGGCAAGTAAGAAGGCCTTGGATCCTGTTGCTCCAGTCTACAAGTATTGCCTCATATCAATTTCCAACATATTGACCACT ACATGCCAGTATGAGGCCCTCAAATATGTTAGTTTCCCCGTCCAGACACTTGCAAAGTGTGCTAAGATGATTCCTGTTATGATATGGGGAACTTTCATCA TGCAAAAGAAATACAACGGAAAAGATTACTTGTTGGCCTTTCTGGTGACCATTGGTTGTTCAGTCTTCATTCTGTTCCCGGCAGGTAGTGATCTAAGTCC ATACAGCAGAGGAAGGGAAAATACTGTTTGGGGAGTTTCTTTGATGGCAGGTTATCTCGGGTTTGATGGGTTTACTAGCACATTCCAGGACAAACTATTC AAAGGATACGATATGGAAATACATAACCAAATTTTCTACACAACTTTGTGTTCGTGCTTTCTTAGTTTCACAGGTATGATACTACAAGGACATCTGCTAC TAGCAATAGACTTCATTTCTCGGCATCACGATTGCTTCCTTGACGTTGCATTGCTCTCCGCAGTCGCAACAGCTAGTCAATTCTTTATTTCATATACAAT CCGCACATTCGGCGCTCTGACTTTTGCCGCGATAATGACAACTAGACAGTTGGTGAGCATCTTGCTATCCTGCGTCTGGTTTTCCCATCCTCTCAGCTGG GAGCAATGGATTGGAGCTGCCATTGTCTTCGGTTCTCTATACGCAAAGAACTTGTGGAGAAACGCACCTCCAAAGGCTCCACCTCAACCTTCTGAAGTAT TAGAAGAAGAAGGCGCTTTGATTCCCCCAAAACAATGA
AA sequence Show only first row Show all	>Lus10005881 pacid=23176928 polypeptide=Lus10005881 locus=Lus10005881.g ID=Lus10005881.BGIv1.0 annot-version=v1.0 MADSASLSAVKENKLWKGVFAVGGIMITLVIYGVLQEKIMRVPYGVNNEYFKYSLFLVFCNRVTTSAISAISLVASKKALDPVAPVYKYCLISISNILTT TCQYEALKYVSFPVQTLAKCAKMIPVMIWGTFIMQKKYNGKDYLLAFLVTIGCSVFILFPAGSDLSPYSRGRENTVWGVSLMAGYLGFDGFTSTFQDKLF KGYDMEIHNQIFYTTLCSCFLSFTGMILQGHLLLAIDFISRHHDCFLDVALLSAVATASQFFISYTIRTFGALTFAAIMTTRQLVSILLSCVWFSHPLSW EQWIGAAIVFGSLYAKNLWRNAPPKAPPQPSEVLEEEGALIPPKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	0	1
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	1.7	0.8611
AT3G61610			Galactose mutarotase-like supe...		Lus10012640 [exp]	3.7	0.8424
AT2G26680			unknown protein		Lus10005721 [exp]	5.7	0.7756
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	10.0	0.8148
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	14.8	0.8128
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	15.5	0.8085
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	15.9	0.7918
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	17.4	0.8292
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	24.4	0.7614
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	26.3	0.8092

Compare expression of checked genes

Lus10005881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.