Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59750 503 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) AT5G64300 442 / 3e-151 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 311 / 6e-101 riboflavin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012751 [exp] 429 / 5e-146 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 426 / 6e-145 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10035929 [exp] 426 / 8e-145 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 420 / 2e-142 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10006669 [exp] 282 / 1e-89 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 275 / 2e-85 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 0 / 1 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234900 [exp] 533 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Potri.001G310500 [exp] 444 / 1e-151 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.007G097300 [exp] 436 / 8e-149 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 431 / 2e-148 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 402 / 8e-136 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10005882 pacid=23176912 polypeptide=Lus10005882 locus=Lus10005882.g ID=Lus10005882.BGIv1.0 annot-version=v1.0 ATGGCATCGTCCATAAACAATCCACAACTTCCATCAACGAATCCGAACCACCGATGGATTCTACCGCCTTACTTCCCCGAGCTACCAACTTCCCCCGCCA AGTCCTCCCGCGCAACTCCCTCCATCCTCCTCCTTCCTCAGGCGGAGTATCTGGAGCAACTCACTGCAAATGCAAAACAACCCAACCCAGAAACAGAGCC AGCAGCTGGACTGCCTCCGCCGCCGGTGCTAAAAACGGCGCCGCATTCGACGACACCAATCCGACACCGTTTTGAACCGTTAACGCCGAAATCACAACCG GCACAATCGATTTCTTCGTCAGCGACGCCGAAGGCGACCCGGATTGCCCCACGCCAGGCTACTCCTCGATTGATCTCGCCCTTAGCACCCTTTACCAAGG AAAGGGGAAGGATGAGTTGGCTGGTTGCTGGAGCTCGTCAGCATTATCCGTTTGGCAACGTCGTCGTCTTCATGAAAGAAGATGATCTCGTCAGGCTGAA TCTTCCATTGATGTCCCCTGAAACTGAAGATGAGGACTCCTCTGCTCCTACTTTCACCATCACAGTAGACGCTAAAGCAGGGAAAATGACGGGAGTATCG GCGGCGGACAGAACAAAGACGGTACTTGCTCTAGCTTCTGCAAATTCCAGACCTGGAGATTTCAGGAAACCGGGGCATGTGTTTCCACTCAAGTATCGAA ACGGAGGCGTTTTACGAAGGACTGGTCACACTGAAGCTTCGGTTGATTTAGTAATGCTGGCTGGATTGCGGCCAGTTTCGGTCCTTTCAGCCGTCGTGGA CCCTGACCATGGCTCCATTGCCTCCTTGGCAAGTCTCGGGAATTTGGCTATGGAGCATAACATACCAATAGTCTCGATTGACTTAATATGCTACCGGTCG AAACTAGATGGTACGGAACACATAGCCGTTGTCAAGGGAGACATAGGAAACAGGGAGGATGTACAAGTGAGAGTGCACTCGGAGTGCTTAACGGGCGACA TTTTCGGGTCAGGAAGATGCGACTGCGGGAACCAATTGGACTTAGCGATGAGATTGATCGAACAAGAGGGTCGAGGAGCGATGGTGTACCTACGAGGCCA CGAAGGGAAAGGGATTGGCCTTGGTCACAAGTTACAAGCCTATAACTTGCAGGGCATGGGGCACGACACGGTCGAACAGAATATTGAGCTTGGTTTGGCC ATAGATTCGAGGGAATGTGGCATTGGCGCACAGAGATTGAGGGACATAGGGGTGAGAACAATGAGGCTGATGACGAACAATCCGGCCAAGTTCATGGGGC TGAAAGGATACGGGTTGGCGGTGGTGGGGAGAGGTCCGGTGATGACACCGATCACCGAGGAGAACAAGAGGTACTTGGAGACGAAACGGGTTAAGATGGG TCACATTTACGGGTCGGACCTTCAAGGACATTTGACTGAGGCTTTGACCAGGGAATGA
AA sequence Show only first row Show all	>Lus10005882 pacid=23176912 polypeptide=Lus10005882 locus=Lus10005882.g ID=Lus10005882.BGIv1.0 annot-version=v1.0 MASSINNPQLPSTNPNHRWILPPYFPELPTSPAKSSRATPSILLLPQAEYLEQLTANAKQPNPETEPAAGLPPPPVLKTAPHSTTPIRHRFEPLTPKSQP AQSISSSATPKATRIAPRQATPRLISPLAPFTKERGRMSWLVAGARQHYPFGNVVVFMKEDDLVRLNLPLMSPETEDEDSSAPTFTITVDAKAGKMTGVS AADRTKTVLALASANSRPGDFRKPGHVFPLKYRNGGVLRRTGHTEASVDLVMLAGLRPVSVLSAVVDPDHGSIASLASLGNLAMEHNIPIVSIDLICYRS KLDGTEHIAVVKGDIGNREDVQVRVHSECLTGDIFGSGRCDCGNQLDLAMRLIEQEGRGAMVYLRGHEGKGIGLGHKLQAYNLQGMGHDTVEQNIELGLA IDSRECGIGAQRLRDIGVRTMRLMTNNPAKFMGLKGYGLAVVGRGPVMTPITEENKRYLETKRVKMGHIYGSDLQGHLTEALTRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10005882 [exp]	0	1
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	7.5	0.8145
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	9.7	0.8154
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	13.0	0.7894
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	18.3	0.7928
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	29.1	0.7770
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	30.0	0.7511
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10042673 [exp]	33.2	0.7823
AT3G43660			Vacuolar iron transporter (VIT...		Lus10018150 [exp]	33.5	0.7795
					Lus10027443 [exp]	34.7	0.7343
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	39.4	0.7773

Compare expression of checked genes

Lus10005882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.