Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 188 / 4e-62 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 179 / 8e-59 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005441 [exp] 212 / 2e-71 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 211 / 2e-71 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 211 / 4e-71 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10030325 [exp] 210 / 6e-71 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 211 / 1e-70 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10003290 [exp] 207 / 7e-70 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 219 / 1e-68 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10025302 [exp] 88 / 1e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10024430 [exp] 88 / 1e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027000 [exp] 202 / 7e-68 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 200 / 5e-67 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 200 / 5e-67 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 197 / 9e-66 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 196 / 3e-65 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005883 pacid=23176946 polypeptide=Lus10005883 locus=Lus10005883.g ID=Lus10005883.BGIv1.0 annot-version=v1.0 ATGTTGTATAAACCAGATAACAAGCCGAAGCCAGATGCCAAGGCAAAGGCAGTGAAAGCTGCAAAAGCAGTGAAGTCTGGTCCAACATTCAAGAAGAACG TGAAGAAGATCAGGACCAAGGTCACATTCCACCGACCAAGGACATTGAAGTTGGAGAGGAACCCCAAGTATCCGAGGATTAGTGCACCTCCAAGGAACAA GCTTGATCATTACCAGATCTTGAAGTTCCCTCTGACCACTGAGTCTGCTATGAAGAAGATCGAAGACAACAACACTCTGGTCTTCATTGTCGACATCCGT GCTGACAAGAAGAAGATCAAGGATGCCGTCAAGAAAATGTACGATATCCAGGCAAAGAAAGTCAATACCCTCATCAGGCCTGATGGAACCAAGAAAGCGT ATGTTAGGTTGACACCCGACTATGATGCATTGGACGTGGCAAACAAAATTGGGATCATCTAA
AA sequence Show only first row Show all	>Lus10005883 pacid=23176946 polypeptide=Lus10005883 locus=Lus10005883.g ID=Lus10005883.BGIv1.0 annot-version=v1.0 MLYKPDNKPKPDAKAKAVKAAKAVKSGPTFKKNVKKIRTKVTFHRPRTLKLERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIR ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	0	1
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	1.0	0.9571
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	2.6	0.9342
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	4.7	0.9514
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	8.2	0.9445
AT3G12870			unknown protein		Lus10031198 [exp]	8.4	0.9366
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	8.5	0.9329
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019682 [exp]	9.8	0.9225
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	10.1	0.9347
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	10.2	0.9290
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	10.7	0.9446

Compare expression of checked genes

Lus10005883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.