Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28690 164 / 2e-50 Protein of unknown function (DUF1635) (.1) AT5G59760 123 / 4e-34 Protein of unknown function (DUF1635) (.1) AT5G22930 103 / 1e-26 Protein of unknown function (DUF1635) (.1) AT2G28140 84 / 1e-19 Protein of unknown function (DUF1635) (.1) AT3G44940 83 / 1e-18 Protein of unknown function (DUF1635) (.1) AT5G09940 61 / 5e-11 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040864 [exp] 348 / 4e-122 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1) Lus10021419 [exp] 86 / 4e-20 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1) Lus10038677 [exp] 77 / 2e-16 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1) Lus10037944 [exp] 74 / 2e-15 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1) Lus10016148 [exp] 46 / 4e-06 AT5G22930 104 / 4e-28 Protein of unknown function (DUF1635) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027100 [exp] 174 / 4e-53 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 168 / 5e-51 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 162 / 1e-48 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 104 / 2e-26 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.018G024900 [exp] 87 / 3e-20 AT2G28690 121 / 4e-33 Protein of unknown function (DUF1635) (.1) Potri.009G006000 [exp] 86 / 6e-20 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 83 / 1e-18 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 81 / 8e-18 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.010G229200 [exp] 77 / 2e-16 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [flax] [poplar] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Lus10005884 pacid=23176929 polypeptide=Lus10005884 locus=Lus10005884.g ID=Lus10005884.BGIv1.0 annot-version=v1.0 ATGGAAGAATTGGGTTCCATGTGGAGCTATCAAGAGAGCATTGAAGAAGTAAGGCAGAGCCTCCTGTACAAGACGATGGAGCTTGAATCAGTCAAATCCG AAGCCAACGAGAAGTTGAAGAAATGCACAGAAGAGATGAACCAGCTAGTCTGTTTACTGAAACTAGCTTACCAGGAAAGAGATGAAGCCAAGGAAAATCT CCAAACCTTTATCAACAAATTCTACCCAATAGCCTCCGCCTCCGCGCCGCCGCCGGGGAGCCCGATTGTGATCACCAGAGCCAATTCCAGCATCACAGAG TCCAACAGCCTCTCCGACAACAACAACAACAATAACAACCATAATTACTCTTCTCCAGTCGATTCCTTCTTCCACGACGTCGTTTCGTCGCCGGCGGCGG CGATAAAGTACGACCCTTTCGACGCGGTAGTGGAGAATCTGGCGAAGGGGAAGCAATTGCCGCAGCAAGGGAAGCTTCTGGAAGCTGTGATGGCGGCCGG CCCACTGCTGAACACTCTGATGGTTGCTGGGCCGTTGCCACGGTGGAGGAATCCGCCCAAGGTGCAGACTTTCAAGATCCCTCCGGTTTCGATCAAGGGG TCCGATGGTAATTTGGGCTGCTCTTCTTCTGCCGCTGCTGCTGCTTCGATGTTGGATTTCGGCAATGTGGGTGGTGGTGTTGGGTCGTGTTCTGGGTTTG GGTCCGGTGGTTGGAGTCAGGTTCCGGCGGGGAAGAGGCAGAGGTTTCATTGA
AA sequence Show only first row Show all	>Lus10005884 pacid=23176929 polypeptide=Lus10005884 locus=Lus10005884.g ID=Lus10005884.BGIv1.0 annot-version=v1.0 MEELGSMWSYQESIEEVRQSLLYKTMELESVKSEANEKLKKCTEEMNQLVCLLKLAYQERDEAKENLQTFINKFYPIASASAPPPGSPIVITRANSSITE SNSLSDNNNNNNNHNYSSPVDSFFHDVVSSPAAAIKYDPFDAVVENLAKGKQLPQQGKLLEAVMAAGPLLNTLMVAGPLPRWRNPPKVQTFKIPPVSIKG SDGNLGCSSSAAAAASMLDFGNVGGGVGSCSGFGSGGWSQVPAGKRQRFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28690			Protein of unknown function (D...		Lus10005884 [exp]	0	1
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	3.0	0.9315
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	6.5	0.9022
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	9.7	0.8939
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017993 [exp]	12.0	0.8614
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	12.7	0.9029
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	16.2	0.8884
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	22.3	0.8810
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	23.2	0.8994
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	24.3	0.8543
AT1G62770			Plant invertase/pectin methyle...		Lus10024593 [exp]	24.5	0.8797

Compare expression of checked genes

Lus10005884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.