Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01470 368 / 4e-130 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G36830 351 / 2e-123 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G26520 328 / 2e-114 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT1G73190 267 / 3e-90 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 266 / 1e-89 BETA-TIP beta-tonoplast intrinsic protein (.1) AT3G16240 262 / 2e-88 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT5G47450 247 / 2e-82 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT4G17340 237 / 1e-78 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT2G25810 226 / 2e-74 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT3G47440 160 / 2e-48 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040863 [exp] 447 / 4e-161 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1) Lus10022611 [exp] 374 / 1e-132 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10021510 [exp] 374 / 3e-132 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10023913 [exp] 360 / 9e-127 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10014411 [exp] 357 / 2e-125 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10003288 [exp] 342 / 1e-119 AT4G01470 388 / 6e-138 tonoplast intrinsic protein 1;3 (.1) Lus10018256 [exp] 268 / 1e-90 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1) Lus10038324 [exp] 265 / 2e-89 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10036187 [exp] 265 / 2e-89 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235300 [exp] 385 / 4e-137 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.010G209900 [exp] 376 / 2e-133 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 374 / 2e-132 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.008G050700 [exp] 365 / 5e-129 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.006G121700 [exp] 356 / 2e-125 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 355 / 7e-125 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.009G005400 [exp] 320 / 6e-111 AT2G36830 355 / 7e-125 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.004G216500 [exp] 317 / 4e-110 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1) Potri.018G152100 [exp] 275 / 4e-93 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1) Potri.017G154800 [exp] 273 / 1e-92 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10005885 pacid=23176903 polypeptide=Lus10005885 locus=Lus10005885.g ID=Lus10005885.BGIv1.0 annot-version=v1.0 ATGCCGATATCTAGCATTGCTTTCGGGTCTCTTGCAGAAGCTGGCAAGCCCGATGCACTGAAAGCTGGGTTGGCCGAGTTCATCTCCATGCTCATCTTCG TCTTCGCCGGCGAAGGCTCCGGAATGGCTTTCGGCAAACTCACCGGCGGCGGACCAGCAAGCCCGGCGGGACTAATATCGGCGGCCTTGGCTCATGCATT TGCCCTGTTTGTGGCGGTTTCCGTGGGTGCCAACATCTCCGGAGGCCACGTCAACCCCGCCGTTACATTCGGCGCATTTGTTGGAGGACACATCACGTTT GTCCGGAGTGTTGTGTATTGGATTGCTCAATTGCTCGGGTCCGTCGTCGCTTGCCTGCTTCTCAAGTTCGCTACCGGTGGCTTGGAAACGTCAGCGTTTG CGCTGTCAGCGGGAGTAGGGGAATGGAACGCTGTCGTTTTCGAGATCGTGATGACTTTCGGCTTGGTGTACACTGTCTACGCTACTGCCGTGGACCCCAA AAAAGGGGACTTGGGAACGATTGCGCCCATTGCCATTGGTTTCATCGTGGGGGCTAACATCTTGGCTGGTGGAGCCTTTGACGGTGCGTCGATGAACCCA GCAGTGTCGTTCGGACCCGCAGTAGTAAGCTGGACGTGGAGCAGCCACTGGGTTTACTGGCTCGGACCATTCGTCGGTGCCGGCATTGCTGCACTTGTGT ACGAGATTATCTTCATTGCCCCATCCACCCACGAGCCACTCCCCATTCAAGATTACTAA
AA sequence Show only first row Show all	>Lus10005885 pacid=23176903 polypeptide=Lus10005885 locus=Lus10005885.g ID=Lus10005885.BGIv1.0 annot-version=v1.0 MPISSIAFGSLAEAGKPDALKAGLAEFISMLIFVFAGEGSGMAFGKLTGGGPASPAGLISAALAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITF VRSVVYWIAQLLGSVVACLLLKFATGGLETSAFALSAGVGEWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGTIAPIAIGFIVGANILAGGAFDGASMNP AVSFGPAVVSWTWSSHWVYWLGPFVGAGIAALVYEIIFIAPSTHEPLPIQDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	1.4	0.9063
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	3.0	0.9134
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	5.2	0.8833
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	6.9	0.8600
AT1G47980			unknown protein		Lus10037797 [exp]	9.2	0.8636
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10035555 [exp]	9.2	0.8606
					Lus10002087 [exp]	10.1	0.9052
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	11.0	0.9051
					Lus10030676 [exp]	11.4	0.8760
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	11.6	0.8283

Compare expression of checked genes

Lus10005885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.