Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59790 152 / 3e-41 Domain of unknown function (DUF966) (.1) AT2G28150 140 / 4e-36 Domain of unknown function (DUF966) (.1) AT3G46110 129 / 1e-33 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT5G10150 113 / 2e-27 Domain of unknown function (DUF966) (.1) AT1G05577 91 / 8e-20 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040860 [exp] 356 / 3e-119 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 213 / 6e-64 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 204 / 1e-60 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 147 / 1e-38 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 146 / 2e-38 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 107 / 4e-26 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 107 / 1e-25 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 84 / 3e-17 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 79 / 1e-15 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027500 [exp] 172 / 2e-48 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 165 / 6e-46 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 149 / 4e-39 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 144 / 2e-37 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 132 / 7e-36 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 132 / 4e-35 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 118 / 8e-29 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 89 / 1e-18 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 87 / 4e-18 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10005887 pacid=23176913 polypeptide=Lus10005887 locus=Lus10005887.g ID=Lus10005887.BGIv1.0 annot-version=v1.0 ATGGCGGTCAGCAGTTCCAGAGGAAGAACCACCGACCTTCTTCGTCTCCCGAGGAAATGGAGCGATCGAGAACCCACTCCTGATAGACTCAGAGTCTGGG GTCACAACAACAGTACCAGTACTGCAATGACTAGCGATGAACTTGGCCATGAAAAGACAAAAATCACCTCGCCCGAAACCACCAGAGTCGCCGTTGTTTA CTACCTCTCTCGCAATGGCCAGCTCGAGCACCCGCATTTCATGGAAGTCCCTCTCTCCTCCCCCGACGGACTCCACCTCCGAGATGTACTCAATCGACTG AACCTGCTCCGGGGAAAAGGCATGGCTAGTCTCTACTCCTGGTCATCCAAACGGAGCTACAAGAGCGGATTTGTTTGGCACGATTTGGCGGAGGATGATT TCATCTACCCTGCTCACGGCAACGAATACGTGCTCAAAGGATCGGAGCTTCCGGAACCTTCGGCGCCGCTGGTCCAATCGGTGGAGGATTCCTTCAGATC TCTCAAGGTATCGGCGGCCGAGACTCACGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCACAAGCCGTCGTCATCGTCGGCCTCG AGCGACGAGCTGGTTGCTGCAGCTCGTCCGGCTATCGTGCGTCGGAGGAACCAGTCGTGGAGCTCAATCGATCTCAGCGAGTACAAGGTTTACAAGGCGG AGCCGTTCTCGCAGTCGAGCCGGAGGCTGGCGGCGGACGCGGCGACTCAGACGGACGACAAGCGGCGGAGGAGGAGAGCAGCGGTGAAGCTTGATGAGGA GGAGGAAGAGGAAGAAGGAGAGATAGTCGAAGAGTTGAGGAGGAGGCCGGAAAGAGATCAAAGCAGAGAAGAAATCGAGATTGGGATCGGGATCTCGCCT CCGCCGTCTGATTCCAGCCCGGAGACGCTGGAGACGGAGGCGTCGGCGTTTGTGGTGCAGGTGATCGACCGCGGGTCCATCTCGTTCAGAGACTGTGGGG CCACAGCGGTGAAGGAGCAAGGGCTCTCTCTGATTGGCCAGTACAAAGGGAGACTGCCACGTGGCATGGGGGACCACCTTGCTGCTGGCACATCGAGCGA AATTCGTGCTTCGCCAGGGGTAATATTGGAAGATAAGGAGTATTTCAGCGGGAGCTTGATCGAGACCAAGAGGAAGCAAGATTTTCCCGGTTTGAAGCGG TCCAATTCATACAATGCAGACAGGGTTTCACAGTTGCAGTTGGGGGAAAAGGCTGAAGAAGTCGTCGGAGGAAGGCGTAGCGCTGCTGCCGGCATGACGA AATGCATCCCGAGGAAGCAGGGCAAGGCGGCGAGTAGGAAAGATGAAGATCAGAGCAGCAGTACTACTGGAAGCAAGAGATTCGAGGAGAATGTCGATGA TCCGAAACTTTGA
AA sequence Show only first row Show all	>Lus10005887 pacid=23176913 polypeptide=Lus10005887 locus=Lus10005887.g ID=Lus10005887.BGIv1.0 annot-version=v1.0 MAVSSSRGRTTDLLRLPRKWSDREPTPDRLRVWGHNNSTSTAMTSDELGHEKTKITSPETTRVAVVYYLSRNGQLEHPHFMEVPLSSPDGLHLRDVLNRL NLLRGKGMASLYSWSSKRSYKSGFVWHDLAEDDFIYPAHGNEYVLKGSELPEPSAPLVQSVEDSFRSLKVSAAETHGXXXXXXXXXXXXXGHKPSSSSAS SDELVAAARPAIVRRRNQSWSSIDLSEYKVYKAEPFSQSSRRLAADAATQTDDKRRRRRAAVKLDEEEEEEEGEIVEELRRRPERDQSREEIEIGIGISP PPSDSSPETLETEASAFVVQVIDRGSISFRDCGATAVKEQGLSLIGQYKGRLPRGMGDHLAAGTSSEIRASPGVILEDKEYFSGSLIETKRKQDFPGLKR SNSYNADRVSQLQLGEKAEEVVGGRRSAAAGMTKCIPRKQGKAASRKDEDQSSSTTGSKRFEENVDDPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	0	1
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	1.0	0.9547
AT3G21710			unknown protein		Lus10027176 [exp]	2.4	0.9401
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	3.9	0.9324
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10001988 [exp]	5.2	0.9386
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	13.7	0.9125
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	13.9	0.9281
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	14.1	0.9118
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	18.5	0.9029
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	20.0	0.9248
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	21.0	0.9361

Compare expression of checked genes

Lus10005887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.