Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59800 122 / 7e-32 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) AT5G59380 48 / 4e-06 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 44 / 4e-05 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G35330 41 / 0.0008 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040859 [exp] 284 / 6e-96 AT5G59800 66 / 3e-13 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10005460 [exp] 47 / 5e-06 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10004963 [exp] 47 / 2e-05 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10027447 [exp] 45 / 7e-05 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10038869 [exp] 43 / 0.0004 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027600 [exp] 105 / 4e-26 AT5G59800 96 / 3e-23 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Potri.009G031100 [exp] 65 / 7e-12 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.001G240100 [exp] 59 / 7e-10 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.012G138300 [exp] 58 / 7e-09 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2) Potri.015G140100 [exp] 57 / 1e-08 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10005888 pacid=23176939 polypeptide=Lus10005888 locus=Lus10005888.g ID=Lus10005888.BGIv1.0 annot-version=v1.0 ATGGAGCCCCAATCATCCTCCCGAATTACCATCCAAATCCCCAAACTCAGCTCCGACGACACCACCAACAACAACAATCAGCTCCACATTCAAGCCCATG ATCCCTCTGCTGCGCTCCACATTGTGCCGCCGGATCAAACCGTCTGCTCCTTCCCCGCCGCAGCTTCATCGCCGGAGAAATTCCAGCTGCCGGAAGGTTG GATCGTCGAGAAACGCCGCCGCCGATTCAACTCATTTGGTGGTTCCCCGGTCTTTGACAAGTGTTACATTGAGCCAGGGAGCGAAAGGCGATTCCGTTCA CTATTATCTGTTCAGAGATACATCACGGGAGGGAGCGAATCTGAAGCTAAGCCCAAGGTGGTTAAGTCGCCAAGAGATGAAAAGGACAATATGCAAATTG TTCCCAGTGTATATGATGATGGTTCGCAATTGGGTTTACCTAGCGGTTGGCTTGTTGAGTTAAGACCTCGAAGTGATCCTAGTAAAATCGACAAGTATTA CATTGAGCCACACACTGGAAGGCGGTTTCGTTCCCTACCTGATGTACGTAGATATCTTAAGGAAGAGGAAGGTTATGTGGGTACGCCCATGGTGATAAAG TCTAGACATGACCGGAACAATACGCAAGTTGTTCCAAGTGTATATGAGGATGGTTCGCTACTGGGTTTACCTTCTGGTTGGCTTATTGAATTAAGACCTC GCCGGGATCCTAGTAAATTGGATAAGGTGCAAAGTGTTCCCAGTGTCAAGAGCGGCTCGCAATTCAACTTACCTTGTGATTGGCTTGTTGAGTTAAGACC ACGGAGTGATGGTACTAGATCTGACAAGTATTACATCGAACCAGGGACTGGACGGAAGTTCCGATCGGTGGTAGCTGCTCAGAAACACATCAAAGAAGCC GGAATGCTTACAACCAGTCCCAAAGCATTGATACCAATGGTTTATACTACGAAGGATAATGTCACCGGGAAGGTGAAAAAATTCAAACATTTAGCAGATG TAGGAAAAACCAGTGAACTGACCATGAAGCTTCACACAAGCAAGGAGACCAGAGCTGTAACACCCAGCCGACCGGTAACTCGAATAAAATGGGTTTTCAG TGGTCAACCCGAAAATACATGGAGTCCTTCCATCGACGGTTCTCCAGTGCCTAATTCTGAAGTTCAGCAATGGTCCGAGGCATTCGTGTTGAGCATGGAC TCTCAATGA
AA sequence Show only first row Show all	>Lus10005888 pacid=23176939 polypeptide=Lus10005888 locus=Lus10005888.g ID=Lus10005888.BGIv1.0 annot-version=v1.0 MEPQSSSRITIQIPKLSSDDTTNNNNQLHIQAHDPSAALHIVPPDQTVCSFPAAASSPEKFQLPEGWIVEKRRRRFNSFGGSPVFDKCYIEPGSERRFRS LLSVQRYITGGSESEAKPKVVKSPRDEKDNMQIVPSVYDDGSQLGLPSGWLVELRPRSDPSKIDKYYIEPHTGRRFRSLPDVRRYLKEEEGYVGTPMVIK SRHDRNNTQVVPSVYEDGSLLGLPSGWLIELRPRRDPSKLDKVQSVPSVKSGSQFNLPCDWLVELRPRSDGTRSDKYYIEPGTGRKFRSVVAAQKHIKEA GMLTTSPKALIPMVYTTKDNVTGKVKKFKHLADVGKTSELTMKLHTSKETRAVTPSRPVTRIKWVFSGQPENTWSPSIDGSPVPNSEVQQWSEAFVLSMD SQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	0	1
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	2.0	0.8665
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	4.0	0.8708
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	8.5	0.8364
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	11.4	0.8186
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10002858 [exp]	11.4	0.8352
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10013418 [exp]	11.7	0.8058
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	12.2	0.8224
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	13.0	0.8143
AT3G11590			unknown protein		Lus10017001 [exp]	15.0	0.8171
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	15.3	0.7934

Compare expression of checked genes

Lus10005888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.