Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59830 264 / 1e-83 unknown protein AT5G13660 185 / 2e-52 unknown protein AT3G53680 130 / 2e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 130 / 2e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 71 / 9e-13 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 65 / 7e-11 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040857 [exp] 799 / 0 AT5G59830 262 / 2e-83 unknown protein Lus10025307 [exp] 198 / 3e-57 AT5G59830 238 / 6e-73 unknown protein Lus10024426 [exp] 182 / 5e-52 AT5G59830 231 / 1e-70 unknown protein Lus10024427 [exp] 172 / 3e-46 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10005963 [exp] 169 / 3e-45 AT5G13660 216 / 4e-60 unknown protein Lus10025315 [exp] 137 / 1e-34 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 137 / 2e-34 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 82 / 4e-16 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 81 / 1e-15 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027800 [exp] 370 / 1e-124 AT5G59830 380 / 2e-129 unknown protein Potri.001G236000 [exp] 361 / 2e-121 AT5G59830 375 / 2e-127 unknown protein Potri.006G082800 [exp] 251 / 3e-77 AT5G13660 261 / 2e-80 unknown protein Potri.008G051300 [exp] 206 / 6e-60 AT5G13660 317 / 1e-100 unknown protein Potri.010G209300 [exp] 196 / 4e-56 AT5G13660 308 / 2e-97 unknown protein Potri.006G083600 [exp] 139 / 4e-35 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 75 / 4e-14 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 75 / 5e-14 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 68 / 6e-12 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 62 / 8e-10 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005889 pacid=23176944 polypeptide=Lus10005889 locus=Lus10005889.g ID=Lus10005889.BGIv1.0 annot-version=v1.0 ATGATTGTATTGCAGTCTTTTCAGGATCAGGGTTTAAGGCGGCGAAAGGGTGCTGCAGATGAAGATCAGACATTTAATAGCTCTTCGAGAATGGAGGCTA AGAGAACTCATCAGTGGTTTGCTGATGGTGCTGAACTAGACTTGTACCCTTACAAGAAGCAAGCTGTGGGACCTTCGAATGCAATGCCAGGCTCAGGAGT CCCTACTGCATGTCCATGGGATCCTAATGCCAAAGGCTCTAGAGTCTCTACTGCATCTCCATGGGATCATCCTAACACCAGTTATCAGAACACCAATTTT CAGAGAGAAAATGACCAATTTGTTCACCAGTTATTTGGATCCGACGCACCATTATCTGACAACTTGTCTTATCGGAATATATCTCATGGTGGAGCAGGGA ACGTAGATGCATCAGCTGGTCTGTCTAGTTCTCACGGTATGGGACATATTGATTTGAGTATTAGCTATGGTGGTGCGAGAAAAGTCAAAGTGGATCTAGT CAAGGGCGGAAATGAGATGAGCCTTTATTCGAGGGGACATAATTCTCTTGCCGGAACCGATTTCAGCATATCTCAGAATCAGGAGGTTAATACGGGCGGT GGTGTTGGTTTAATGTTGACAGGACATGCTACCAACAAGGAACAAGAAAATGTACTGTACATGAACCAGATCTACAATGGAGGGGGAATACATACTGGTA CTGTAAACACCTCTAGCTATGTTCAAGGAGGTATAAATGCTGCTCCGATCAGTACTTGCGGTAAGGAGGCTGAGAATGCGTTGTTCTTTGACGGATTTGA CCAACCCTATGATGTTTCTTTGGTTCGCCCACCAGAAGCAGCAGCTCAAAAACCGGAGCCAGATGCCTCGAATGCAAGTTCGGCCATACCAGCTGCACCG AAACCGAAACAGCAGTCTTCAAAGGCAAAACCGGAAAGCAAGCCGTCCCGTAAAGAAGCTCCAAACAGTTTCCCTGCAAATGTCAAGAGTTTGTTACAAA CAGGCATGCTTGATGGGATCCCGGTGAAGTACGTTTCGGTATCTCGGGAGGCTTTTCAAGCTGTCATAAAGGATTCTGGCTTTCTTTGTGGTTGTCAATT ATGTAACTACACCAAGGCGGTGAATGCATATGAGTTGGAACGTCATGCTGGCTTTAAATCGAAACACCCAAATAGCCATATCTACTTCGACAATGGGAAG ACTATATATCAGGTGGTGCAGGAATTGAAGAGCACGCCGCAAAGCAAGTTGTTTGATGTCATTCAAACGGCGTTTGGTGCGCCGCTCAATCAGAAGTCCT TCAAAATCTGGAAAGAGTCGTACGAGGCTGCAATGCGGGAGCTGCAGCGTATATATGGCAAGGACGAATTGAATTTGTGA
AA sequence Show only first row Show all	>Lus10005889 pacid=23176944 polypeptide=Lus10005889 locus=Lus10005889.g ID=Lus10005889.BGIv1.0 annot-version=v1.0 MIVLQSFQDQGLRRRKGAADEDQTFNSSSRMEAKRTHQWFADGAELDLYPYKKQAVGPSNAMPGSGVPTACPWDPNAKGSRVSTASPWDHPNTSYQNTNF QRENDQFVHQLFGSDAPLSDNLSYRNISHGGAGNVDASAGLSSSHGMGHIDLSISYGGARKVKVDLVKGGNEMSLYSRGHNSLAGTDFSISQNQEVNTGG GVGLMLTGHATNKEQENVLYMNQIYNGGGIHTGTVNTSSYVQGGINAAPISTCGKEAENALFFDGFDQPYDVSLVRPPEAAAQKPEPDASNASSAIPAAP KPKQQSSKAKPESKPSRKEAPNSFPANVKSLLQTGMLDGIPVKYVSVSREAFQAVIKDSGFLCGCQLCNYTKAVNAYELERHAGFKSKHPNSHIYFDNGK TIYQVVQELKSTPQSKLFDVIQTAFGAPLNQKSFKIWKESYEAAMRELQRIYGKDELNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59830			unknown protein		Lus10005889 [exp]	0	1
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	2.2	0.7275
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	22.0	0.7108
AT1G03910			unknown protein		Lus10027731 [exp]	25.5	0.6663
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	30.4	0.6237
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10009675 [exp]	38.7	0.6839
AT5G53440			unknown protein		Lus10019025 [exp]	43.9	0.6795
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	51.5	0.6461
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10028714 [exp]	53.4	0.6026
AT3G60380			unknown protein		Lus10028193 [exp]	54.4	0.6618
AT5G53440			unknown protein		Lus10005006 [exp]	89.3	0.6614

Compare expression of checked genes

Lus10005889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.