Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07790 175 / 5e-55 HTB1 Histone superfamily protein (.1) AT3G53650 172 / 4e-54 Histone superfamily protein (.1) AT5G22880 172 / 7e-54 HTB2, H2B HISTONE H2B, histone B2 (.1) AT5G02570 171 / 2e-53 Histone superfamily protein (.1) AT5G59910 171 / 3e-53 HTB4 Histone superfamily protein (.1) AT3G45980 171 / 3e-53 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT3G46030 170 / 3e-53 HTB11 Histone superfamily protein (.1) AT2G37470 169 / 6e-53 Histone superfamily protein (.1) AT2G28720 169 / 8e-53 Histone superfamily protein (.1) AT3G09480 154 / 6e-47 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005893 [exp] 177 / 9e-56 AT3G45980 234 / 8e-81 HISTONE H2B, Histone superfamily protein (.1) Lus10005897 [exp] 177 / 1e-55 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10040855 [exp] 175 / 6e-55 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10037371 [exp] 174 / 1e-54 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1) Lus10017456 [exp] 174 / 1e-54 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10041347 [exp] 174 / 1e-54 AT3G45980 226 / 3e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10017292 [exp] 174 / 2e-54 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 174 / 2e-54 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10023753 [exp] 172 / 4e-54 AT2G37470 203 / 7e-69 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029900 [exp] 177 / 8e-56 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.010G230600 [exp] 176 / 1e-55 AT1G07790 205 / 3e-69 Histone superfamily protein (.1) Potri.010G230801 [exp] 176 / 1e-55 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.010G231300 [exp] 174 / 6e-55 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.008G030600 [exp] 174 / 8e-55 AT5G59910 188 / 2e-62 Histone superfamily protein (.1) Potri.010G230701 [exp] 173 / 2e-54 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.008G030500 [exp] 173 / 2e-54 AT5G59910 190 / 4e-63 Histone superfamily protein (.1) Potri.008G030400 [exp] 173 / 3e-54 AT5G59910 191 / 2e-63 Histone superfamily protein (.1) Potri.017G123700 [exp] 172 / 4e-54 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091200 [exp] 172 / 4e-54 AT5G02570 188 / 2e-62 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005891 pacid=23176909 polypeptide=Lus10005891 locus=Lus10005891.g ID=Lus10005891.BGIv1.0 annot-version=v1.0 ATGGCGCCCAAGGCAGAGAAGAAGCCAGCTGAGAAGAAGCCCGCAGAGGAGAAGAAGACCGTCGCCGAAAAAGCCCCCGCCGAGAAGAAGCCCAAGGCCG GGAAGAAGCTCCCTAAGGAAGCTGGTGCTGCTGCTGCTGCAGGCGACAAGAAGAAGAAAAGGTCGAAGAAGAACGTCGAGACCTACAAGATCTACATCTT CAAGGTTCTCAAGCAGGTCCACCCGGACATCGGAATCTCCAGCAAGGCCATGGGGATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTAGCTCAG GAGTCCTCCAGACTTGCTCGCTACAACAAGAAGCCGACGATTACCTCCAGGGAGATCCAGACTGCCGTCCGATTGGTGCTTCCCGGAGAATTGGCCAAGC ATGCCGTGTCTGAAGGGACCAAGGCTCCGTCGTCATCCCACAAATCGTGCACAACAAAGTCGCCGGACTCTTCGACAGCTCCGGCGGAGAAACAATCACC CATCGCTGCGATATGGCCAGAAGAGCCGGAACGGAGCTCTTCGTTAGCAGTTAACATTCCATCCTCTTTCCTTCCGATCTATGTTCCATTAATTTCCCCC TTTCCGTTCGTTCTAATCCCTGGCACTTTCGCAGGGCTTTCGAATTACATAACCAGACAATCCCTCGAGAAACTGTTCGCACCGTTCGGCGCGATTGAAC AAGCCAGGCTGGTTGTAGATCCAAAAACCAAGAAGCCGAAAGGCTTCGGCTTTGTTAGATTCCAGTCGGAACCCGATGCTCAGAAGGCTCTCAAGGCATT GAATGGCCGGATTGTTGACGGGAGACTGATCTTTGTGGAAGTAGCAAAAACTAAGAAACCTGGAGATGGATGA
AA sequence Show only first row Show all	>Lus10005891 pacid=23176909 polypeptide=Lus10005891 locus=Lus10005891.g ID=Lus10005891.BGIv1.0 annot-version=v1.0 MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEAGAAAAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQ ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAPSSSHKSCTTKSPDSSTAPAEKQSPIAAIWPEEPERSSSLAVNIPSSFLPIYVPLISP FPFVLIPGTFAGLSNYITRQSLEKLFAPFGAIEQARLVVDPKTKKPKGFGFVRFQSEPDAQKALKALNGRIVDGRLIFVEVAKTKKPGDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005891 [exp]	0	1
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	8.8	0.9151
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	12.1	0.9145
AT4G28310			unknown protein		Lus10018597 [exp]	12.2	0.8886
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10030564 [exp]	12.4	0.9076
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	12.8	0.9122
AT1G16630			unknown protein		Lus10006845 [exp]	20.1	0.9085
AT5G42330			unknown protein		Lus10013229 [exp]	21.6	0.9071
AT5G01910			unknown protein		Lus10022734 [exp]	23.8	0.8891
AT5G13520			peptidase M1 family protein (....		Lus10040361 [exp]	24.4	0.8255
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	26.9	0.9039

Compare expression of checked genes

Lus10005891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.