Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07790 190 / 4e-63 HTB1 Histone superfamily protein (.1) AT3G53650 187 / 5e-62 Histone superfamily protein (.1) AT5G22880 187 / 7e-62 HTB2, H2B HISTONE H2B, histone B2 (.1) AT3G46030 185 / 3e-61 HTB11 Histone superfamily protein (.1) AT3G45980 185 / 3e-61 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT5G02570 185 / 3e-61 Histone superfamily protein (.1) AT5G59910 185 / 4e-61 HTB4 Histone superfamily protein (.1) AT2G28720 184 / 6e-61 Histone superfamily protein (.1) AT2G37470 182 / 3e-60 Histone superfamily protein (.1) AT3G09480 167 / 1e-54 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005897 [exp] 192 / 9e-64 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10040855 [exp] 190 / 5e-63 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10037371 [exp] 189 / 9e-63 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1) Lus10017456 [exp] 189 / 1e-62 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10041347 [exp] 188 / 1e-62 AT3G45980 226 / 3e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10017292 [exp] 188 / 1e-62 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 188 / 2e-62 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10023753 [exp] 186 / 7e-62 AT2G37470 203 / 7e-69 Histone superfamily protein (.1) Lus10016156 [exp] 186 / 1e-61 AT3G45980 231 / 1e-79 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029900 [exp] 191 / 7e-64 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.010G230600 [exp] 191 / 9e-64 AT1G07790 205 / 3e-69 Histone superfamily protein (.1) Potri.010G230801 [exp] 191 / 1e-63 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.010G231300 [exp] 189 / 4e-63 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.008G030600 [exp] 189 / 7e-63 AT5G59910 188 / 2e-62 Histone superfamily protein (.1) Potri.008G030500 [exp] 188 / 1e-62 AT5G59910 190 / 4e-63 Histone superfamily protein (.1) Potri.010G230701 [exp] 188 / 1e-62 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.008G030400 [exp] 188 / 2e-62 AT5G59910 191 / 2e-63 Histone superfamily protein (.1) Potri.004G091200 [exp] 187 / 3e-62 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.009G028001 [exp] 187 / 4e-62 AT5G02570 188 / 2e-62 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10005893 pacid=23176915 polypeptide=Lus10005893 locus=Lus10005893.g ID=Lus10005893.BGIv1.0 annot-version=v1.0 ATGGCGCCAAAGGCAGAGAAGAAGCCAGCTGAAAAGAAGCCCGCAGAGGAGAAGAAGACCGTCGCCGAGAAGAAGCCCAAGGCCGGGAAGAAGCTCCCCA AGGAAGCCGGCGCCGCTGCTGCAGGCGACAAGAAGAAGAAGAGGTCAAAGAAGAACGTCGAGACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAGGT CCACCCCGACATCGGAATCTCCAGCAAGGCCATGGGGATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCCTCCAGACTCGCC CGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCGCCGTCCGATTAGTCCTCCCCGGCGAACTCGCCAAGCACGCCGTGTCTGAAGGCA CCAAAGCCGTCACCAAATTCACCAGCTCTTAG
AA sequence Show only first row Show all	>Lus10005893 pacid=23176915 polypeptide=Lus10005893 locus=Lus10005893.g ID=Lus10005893.BGIv1.0 annot-version=v1.0 MAPKAEKKPAEKKPAEEKKTVAEKKPKAGKKLPKEAGAAAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLA RYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	3.0	0.9320
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	4.2	0.9342
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	4.5	0.9179
AT2G30620			winged-helix DNA-binding trans...		Lus10006562 [exp]	6.0	0.9298
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	9.1	0.9331
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	9.2	0.9098
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10016159 [exp]	9.5	0.9096
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10037175 [exp]	9.6	0.8908
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10013849 [exp]	12.1	0.9261
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	12.3	0.9234

Compare expression of checked genes

Lus10005893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.