Plant FIBer expression Database

Lus10005894 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07795 88 / 2e-23 unknown protein
AT2G37530 75 / 3e-18 unknown protein
AT2G28725 73 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040852
[exp]
216 / 8e-74 AT1G07795 97 / 4e-27 unknown protein
Lus10023761
[exp]
69 / 7e-16 AT1G07795 89 / 5e-24 unknown protein
Lus10024416
[exp]
55 / 3e-10 AT2G37530 105 / 2e-30 unknown protein
Lus10025320
[exp]
52 / 3e-09 AT2G37530 99 / 5e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G083800
[exp]
84 / 1e-21 AT2G37530 93 / 1e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10005894 pacid=23176937 polypeptide=Lus10005894 locus=Lus10005894.g ID=Lus10005894.BGIv1.0 annot-version=v1.0
ATGCTACCATTCCAAGCTCTGATCCGTCGTCTCCCATCTCTAAACTGGCGAGTCTTCTTACAAGCGGCGGCGTGGACGACTCTCCTCAGCCTGACAGTCG
CCGTCGCCTCGTTCGCGCCGGAGCTAGCATTTGTCTCTGCTGTTTCGTCGTCTTCCTCGTCGAAAACTGCGTCTTCTTTGCCGTGGCTGTTCTCCAGGAC
GGCGCCGGCGTGTGCAGGGGAAGGAATGGTGGGGCTGCCGATCATGGAATCGCCCAGGGACGTGATCTGCTTGCCTGGTCAGATGGTGAAGAGGTCGAAT
TGGGATTTCTTCGTTCCGACGGTTTTCGCGGCGTTGGTTGTTAGTGGCTCTGCTTGCCTTGTTCGGTCTCTTGGATTGTGGAACGACGCTCGTCAGAGCT
GA
AA sequence
>Lus10005894 pacid=23176937 polypeptide=Lus10005894 locus=Lus10005894.g ID=Lus10005894.BGIv1.0 annot-version=v1.0
MLPFQALIRRLPSLNWRVFLQAAAWTTLLSLTVAVASFAPELAFVSAVSSSSSSKTASSLPWLFSRTAPACAGEGMVGLPIMESPRDVICLPGQMVKRSN
WDFFVPTVFAALVVSGSACLVRSLGLWNDARQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G07795 unknown protein Lus10005894
[exp]
0 1
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Lus10028263
[exp]
12.4 0.8942
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Lus10037664
[exp]
14.6 0.8835
AT3G52480 unknown protein Lus10004203
[exp]
19.3 0.8873
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Lus10015196
[exp]
22.8 0.8596
AT2G03200 Eukaryotic aspartyl protease f... Lus10035961
[exp]
37.5 0.8779
AT1G71320 F-box family protein (.1) Lus10038210
[exp]
38.4 0.8715
AT3G14920 Peptide-N4-(N-acetyl-beta-gluc... Lus10035890
[exp]
45.7 0.8074
AT3G53010 Domain of unknown function (DU... Lus10001129
[exp]
51.9 0.8547
AT4G11950 Protein of unknown function (D... Lus10002998
[exp]
53.5 0.8553
AT3G09410 Pectinacetylesterase family pr... Lus10024398
[exp]
56.7 0.8549

Lus10005894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.