Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02530 184 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G59950 176 / 6e-55 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G37720 122 / 2e-33 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT1G66260 115 / 1e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 54 / 2e-08 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G37220 53 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G23350 53 / 5e-08 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G53460 52 / 1e-07 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT1G71770 49 / 9e-07 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 48 / 2e-06 PAB1 poly(A) binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004946 [exp] 193 / 3e-61 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 189 / 8e-60 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10024413 [exp] 184 / 9e-58 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 182 / 4e-57 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040851 [exp] 166 / 8e-50 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000446 [exp] 134 / 1e-37 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10010982 [exp] 133 / 3e-37 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10023417 [exp] 120 / 6e-33 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040299 [exp] 64 / 6e-12 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093944 [exp] 195 / 3e-62 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 194 / 5e-62 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.010G208000 [exp] 151 / 4e-45 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.004G087000 [exp] 140 / 2e-40 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.017G129900 [exp] 140 / 2e-40 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G052601 [exp] 97 / 9e-25 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G141300 [exp] 55 / 8e-09 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G065900 [exp] 54 / 2e-08 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 54 / 2e-08 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.016G090700 [exp] 52 / 8e-08 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005895 pacid=23176917 polypeptide=Lus10005895 locus=Lus10005895.g ID=Lus10005895.BGIv1.0 annot-version=v1.0 ATGTCTACCACTCTGGATATGTCCCTCGATGATATCATCAAGAGCCATAAGAATCCCTCCTCTGGTAACTTCCGAGGTCGCCCTCGAGGTAGAAGCCTTC TCCGTGGCCGGACTTCAGGACCTGGGCCAGCTCGCCGTATCCTTAACCGGGGATTCAATCGCGCCGCACCATATCTATCTCATCCCACGGCTCCCGAAAC CGCGTGGCAGCACGACATGTTCGTGCCTGAGCCTCCCGCTATTGAGACGGGGACTAAGCTCTACGTCTCCAATCTTGATTACGGCGTCTCAAACGAAGAC GTAAAGGAACTGTTTTCTGAAGTTGGTGATGTGAAGCGGTATGGAATCCATTACGACAGTAGCGGGAGATCCAAGGGGACGGCAGAAGTTGTTTTCTCCA GGCGAACTGATGCTGAATCGGCAGTGAAGAGATATAACAACGTTCAGCTTGATGGAAAGCGAATGAAGATTGAGATTGTGGGAATGAATATTACCAACAC TTCTGCTGTGCCCGTAGCCGTTAATGGAAATTTTGGAAATCCAAATGGAGTAGTGAGCAGAGGCGGTCGAGGTAGGGGTGTTCCTTTCACTCGTCCACGT GGAGGCCGTGGAATCGGAAGGGGTCGTGGACGCAGAATTGGTGGCAGAGGTGGTGAGAAGATGTCTGCTGATGATCTTGATGCTGATCTAGAGAAATATA TTTCAGCAGCAATGCTAGAGAGTTGA
AA sequence Show only first row Show all	>Lus10005895 pacid=23176917 polypeptide=Lus10005895 locus=Lus10005895.g ID=Lus10005895.BGIv1.0 annot-version=v1.0 MSTTLDMSLDDIIKSHKNPSSGNFRGRPRGRSLLRGRTSGPGPARRILNRGFNRAAPYLSHPTAPETAWQHDMFVPEPPAIETGTKLYVSNLDYGVSNED VKELFSEVGDVKRYGIHYDSSGRSKGTAEVVFSRRTDAESAVKRYNNVQLDGKRMKIEIVGMNITNTSAVPVAVNGNFGNPNGVVSRGGRGRGVPFTRPR GGRGIGRGRGRRIGGRGGEKMSADDLDADLEKYISAAMLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	0	1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	1.7	0.9405
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	4.5	0.9187
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006332 [exp]	5.2	0.9186
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	7.1	0.9123
AT5G38700			unknown protein		Lus10002433 [exp]	12.2	0.9148
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	13.2	0.9112
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	13.4	0.8995
AT2G42760			unknown protein		Lus10029248 [exp]	13.7	0.9074
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	14.7	0.9015
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010500 [exp]	16.5	0.8508

Compare expression of checked genes

Lus10005895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.