Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46440 513 / 0 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 508 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 506 / 0 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G47650 363 / 7e-125 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 362 / 3e-124 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 353 / 5e-121 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28755 86 / 2e-21 UDP-D-glucuronate carboxy-lyase-related (.1) AT5G28840 88 / 2e-19 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT1G53500 88 / 2e-19 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 87 / 7e-19 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040847 [exp] 565 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 526 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 508 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001707 [exp] 508 / 0 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001705 [exp] 378 / 5e-133 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10003605 [exp] 372 / 5e-128 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 369 / 1e-126 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 363 / 7e-125 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 362 / 4e-124 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207200 [exp] 521 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 520 / 0 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 519 / 0 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 363 / 7e-125 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 363 / 1e-124 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 359 / 3e-123 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 356 / 4e-122 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.005G053000 [exp] 93 / 2e-21 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 93 / 3e-21 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.006G272700 [exp] 92 / 1e-20 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10005900 pacid=23176921 polypeptide=Lus10005900 locus=Lus10005900.g ID=Lus10005900.BGIv1.0 annot-version=v1.0 ATGGCGACCGATTCAGCTAACGGGCAGCACCAATCAACCACCAAGCCGCCACCACAGCCGTCCCCATTGCGTTCTTCCAAGTTTTGCCAGTCGAATATGA GGATTTTGGTCACTGGAGGAGCCGGATTCATTGGTTCCCACTTGGTGGATCGGCTGATGGAAAATGAGAAGAATGAGGTAATTGTTGCTGATAACTATTT CACCGGATCGAAAGAGAACCTCAGGAAGTGGATTGGCCACCCAAGATTCGAGCTCATCCGTCATGATGTGACAGAGCCATTGCTGGTTGAGGTGGACCAG ATTTACCATCTTGCATGTCCTGCTTCTCCCATTTTCTACAAGTACAATCCTGTAAAGAATGTGATAGGGGTTCGAAGCTGCTACGATGAGGGGAAACGTG TGGCTGAGACATTGATGTTTGATTATCACAGGCAGCATGGCATTGAAATCCGAATCGCGAGGATCTTCAACACATATGGACCGCGCATGAACATTGACGA TGGGCGTGTTGTCAGCAACTTCATAGCTCAAGCACTTCGCGGTGAGCCATTGACTGTACAGAAGCCTGGAACTCAAACCCGTAGCTTCTGCTATGTATCT GACATGGTTGATGGGCTGATCAGGCTGATGGGGGGAGAGAACACTGGACCGATCAACATCGGGAACCCAGGGGAGTTCACCATGACTGAACTTGCCGAGA CAGTGAAGGAGCTGATAAACCCGGAGGTGGAGATAAAGAGTGTGGAGAACACACCGGATGATCCGAGGCAGAGGAAGCCTGACATCACAAAGGCCAAGGA ATTGCTGGGTTGGGAGCCTAAGGTCAAGTTGAAGGACGGACTTCCCCTCATGGAAGAAGATTTCCGTAGGAGGCTTGGAGTGTCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10005900 pacid=23176921 polypeptide=Lus10005900 locus=Lus10005900.g ID=Lus10005900.BGIv1.0 annot-version=v1.0 MATDSANGQHQSTTKPPPQPSPLRSSKFCQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKENLRKWIGHPRFELIRHDVTEPLLVEVDQ IYHLACPASPIFYKYNPVKNVIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS DMVDGLIRLMGGENTGPINIGNPGEFTMTELAETVKELINPEVEIKSVENTPDDPRQRKPDITKAKELLGWEPKVKLKDGLPLMEEDFRRRLGVSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	0	1
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	1.0	0.9781
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	2.2	0.9701
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	3.5	0.9757
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	4.0	0.9702
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	5.5	0.9754
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	5.9	0.9685
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	6.3	0.9675
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	7.1	0.9653
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	11.3	0.9580
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	12.0	0.9693

Compare expression of checked genes

Lus10005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.