Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28780 577 / 0 unknown protein AT3G09450 342 / 2e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040846 [exp] 1262 / 0 AT2G28780 680 / 0.0 unknown protein Lus10024409 [exp] 466 / 2e-152 AT2G28780 528 / 1e-176 unknown protein Lus10025334 [exp] 380 / 2e-120 AT3G09450 466 / 4e-154 unknown protein Lus10007010 [exp] 86 / 0.0001 AT2G28780 55 / 3e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028600 [exp] 749 / 0 AT2G28780 761 / 0.0 unknown protein Potri.001G237300 [exp] 743 / 0 AT2G28780 785 / 0.0 unknown protein Potri.006G082000 [exp] 450 / 2e-146 AT2G28780 555 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF04632 [flax] [poplar] FUSC Fusaric acid resistance protein family
Representative CDS sequence Show only first row Show all	>Lus10005903 pacid=23176906 polypeptide=Lus10005903 locus=Lus10005903.g ID=Lus10005903.BGIv1.0 annot-version=v1.0 ATGCCGACATGCATGCCTAACCACCCGACTCGGGCTTCGAACCGAGCCAGAGCGGTCTGGCAACGCTGTCTTGGCTCCGCCTTTCGAACCGCGCTAGCAT GCACCATAGTGGGCTGCACCACCCTCTACGGCCCGCAGGCCATCCAGCGCCACGTGGCATTCCCGGCCTTCTCCTACGTCACGGTGATCCTCATTGTGAC GGACGCCACCTTGGGGGACGCCCTCAGGGCGTGCTGGCTATCGCTCTACGCGACGGTCCAGACGGTTTGTCCGGCCGTCGTGCTGTTCTGGACGGTAGGG CCGGGCCGGTTCAGCGCCGCCACAATCTCGATGGCTGTGGCGGCGAACGCGTTTGCGGTGGCGCTCCCTGCCGGGACCCACATAGTGGCGAAGCGGATTG CGTTGGGTCAGATTGTGATCATCTACGTGGTGGGGTATATAAAGGGGGATAGCCTGAGGACGGAGTCGGTCATGCATCCGGTGCATGTGGCGGCGAGTAC CGCCGTCGGTGTTGTTGCTTGTGTTCTCGCGCTGCTGCTTCCGTATCCGAGATTAGCTTGTTGGGAGGTGAAGAAGAACTGTAAATTTGCTGTTGAAAAT GCGTCGGAGAGGTTGAAGCTGTACGTGAAAGCATTTTCCGCCGACGATAATGCTTCAGCTTCCGCCTCCCTCACTCGCGCCAAAACACTGGCTTCCGCCG CCACCAAATTCCTCAACAAGATTAAGCTTCACCAGAAAAGCACCAAATGGGAAACTTTTCCGTTGATCCTGCTGGGAAAGAATCGCCCAGTGAATCCAGT GCCCAAGTTGCAGGAAATTGAGATGCTCTTAAGAGGAATGGAATTATCTCTGTCGTCGTCTTCTTCATCGTCAAGATTCAGTCATGGATCAGAATCCAAA CAGAGTTTACAGCAATTACAAGAACACATCAGCCGATCGCTTAAACAAATAATTAGATCAAACTCCTTCACCTCCGATTCATCTCCCACCTTCCCAGAAT CCACCGCCGACACCTTAACCGAATCCCTCCAGAAACTCATCCGAACTTCCCCGACAAACCGCTCCGATTTGCCTCATTTCTTTTTCTGGCATTGTATCGA ACACCTTCACTGCATCTCTTCACCATCTCCAAAACCACCGTCCACCGGCCAGAAAATTGACGGATCAAGCACTAAGAACCCTCAGACATTCATAAGGAGT GTTTGGTTGAGTATGTCCATGGGAATCGGGACCAAATACAGAGTCTTACCGGCGTTCAAATGCTCTGTTTCGTTAGGCCTGGCCGTCATGTTTGGGCTAA TGTACAGCAAGGAGAACGGGTACTGGTCGGGCCTTCCGGTGGCGATCAGCCTTGCTGCCGCCGCTAGAGAGTCGACGTTCACCGTCGCGAACGTGAAAGC GCAAGGAACCGTATTAGGAACGGTTTACGGCGTCCTCGGTTGCTTCGTCTTTGAAAGGTTTTTACCCGTCAGGTTCATGTCTCTGCTTCCGTGGTTCGTC ATCACAAGCTTCCTCCGTCGGAATCGGATGTACGGCCAGGCAGGAGGGATCTCAGCTGTGATCGGAGCTATACTGATCCTCGGCCGGAAGAACTTCGGCC AGCCTAGCGAGTTCGCGATCGCGAGGATCATCGAGACGTTCATCGGATTGTCTTGTTCGATCTTCGTGGATCTATTGTTTCAGCCGACTCGAGCTTCTTC GTTAGCCAAGATCGAGCTATCGGAATGTTTCGCAGCTTTAGGTTCTTGCGTCGACTGCTTGAGTCTGAAGGAAAACACAGCTACCGAATTGATCGATAAC CACAAGCAGCTGAAATCGAACGTCGAGGAGCTGAGGAAACTGATCGGAGAAGCTGAATTGGAACCGAATTTCTGGTTCTTGCCGTTTCCGAGCTCCTGCT ATGGAAAGCTGTTCATTTCCTTGTCAAACATGGGGGATTTATTGCTCTTCAGTGCCCAATTAAGGTTAGGGTTGGCCGGAGATCAAATTAGTGTCTTCCT CAAGGTCGATGGCGAGATTGAAATTTTCAAAGATGCGATCGGTTCTTTGGTAAAATGTTTCGAGGACGTCAGCAGATGGAAACATTCTTTGAAAAAGCTC GACGAAGAGTTGGAGAAGGAGAAGAAGAGCATCGAATACGATTTAGAATCCGGAAAGTTTCCGAATCGGAAGGCATTTAAAGTGTTGAATTCGAGTCAAG CTGACGATCAGGAGAAGAAGGATATTGTGGAGAGTTATTTGGAGCGAGTGAAGGAAGTTGCGGAGGGAGGGGAAAATGGGAAGGAGATGGTGATGTTGGG ATTGGGAGGTGTTGGATTTTGTGTTGATGGGTTGATAAGGGAAGTGAAGGAGGTTAGGAAGTGCATCAATGAACTTGTGCAATTGGAGAATCCTTGTTGT GATAATGTGAACTTGCTTGAAGTTGCTTGTAAGATTGATGCTTTGTATAGTTGA
AA sequence Show only first row Show all	>Lus10005903 pacid=23176906 polypeptide=Lus10005903 locus=Lus10005903.g ID=Lus10005903.BGIv1.0 annot-version=v1.0 MPTCMPNHPTRASNRARAVWQRCLGSAFRTALACTIVGCTTLYGPQAIQRHVAFPAFSYVTVILIVTDATLGDALRACWLSLYATVQTVCPAVVLFWTVG PGRFSAATISMAVAANAFAVALPAGTHIVAKRIALGQIVIIYVVGYIKGDSLRTESVMHPVHVAASTAVGVVACVLALLLPYPRLACWEVKKNCKFAVEN ASERLKLYVKAFSADDNASASASLTRAKTLASAATKFLNKIKLHQKSTKWETFPLILLGKNRPVNPVPKLQEIEMLLRGMELSLSSSSSSSRFSHGSESK QSLQQLQEHISRSLKQIIRSNSFTSDSSPTFPESTADTLTESLQKLIRTSPTNRSDLPHFFFWHCIEHLHCISSPSPKPPSTGQKIDGSSTKNPQTFIRS VWLSMSMGIGTKYRVLPAFKCSVSLGLAVMFGLMYSKENGYWSGLPVAISLAAAARESTFTVANVKAQGTVLGTVYGVLGCFVFERFLPVRFMSLLPWFV ITSFLRRNRMYGQAGGISAVIGAILILGRKNFGQPSEFAIARIIETFIGLSCSIFVDLLFQPTRASSLAKIELSECFAALGSCVDCLSLKENTATELIDN HKQLKSNVEELRKLIGEAELEPNFWFLPFPSSCYGKLFISLSNMGDLLLFSAQLRLGLAGDQISVFLKVDGEIEIFKDAIGSLVKCFEDVSRWKHSLKKL DEELEKEKKSIEYDLESGKFPNRKAFKVLNSSQADDQEKKDIVESYLERVKEVAEGGENGKEMVMLGLGGVGFCVDGLIREVKEVRKCINELVQLENPCC DNVNLLEVACKIDALYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28780			unknown protein		Lus10005903 [exp]	0	1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	8.2	0.8327
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	10.0	0.8350
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	12.2	0.8252
					Lus10000363 [exp]	12.2	0.8188
					Lus10003285 [exp]	13.6	0.8188
					Lus10004996 [exp]	14.9	0.8188
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	16.1	0.8188
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	17.2	0.8188
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	18.2	0.8188
AT1G24560			unknown protein		Lus10025844 [exp]	19.1	0.7136

Compare expression of checked genes

Lus10005903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.