Plant FIBer expression Database

Lus10005904 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G208058
[exp]
88 / 2e-19 AT1G02960 207 / 5e-61 unknown protein
PFAM info
Representative CDS sequence
>Lus10005904 pacid=23140114 polypeptide=Lus10005904 locus=Lus10005904.g ID=Lus10005904.BGIv1.0 annot-version=v1.0
ATGTCAAATTATGAGACGCGTCTTTTGGTGGAAGATGAGCTAGAAGAACCTGATTTCCGTAATGATGATGGCCTAACCTTGCCAATTAGCGCAGAATGCA
TTCACAATGCTGATAAAAACCAGAGTAATTATGTTTTATCAAACTCTACTGCAACCCCCATTGCTAAACATTCACGTCCAGAAGCTGCTGTCCCTCGTTT
AAATTGGGCAATGAAACACGAGGCATGGCCCATCGCCAGTGAAGAAGCCAAGTCACTAAACCACCTGCACGAAACCTCTCGTTCTGGCCTCAAACAAACA
CGTAAATCTTCTAAAGGTGTTAAGGGTAGAGCCAAGCGAAGGTTCTCTTTCCAGTTTCAGCCATCTATAGCCCAATTTCATGAAAGATCTGACTGCCATT
GGTCAGAAGCGATTCATACTGTTAAGGCTGAAACTACAGTCCAAGGGGTTATTTGTGGATCTGATGGAAAAAATGAAGCAAGGTCTGAGATTTGGCCCAC
TAAACTAGAACCAGTTGAGAACCATGTTACTGGGCATTCAATCTCTGAACTATTGGATGATATTCAAGATAACAGTATTTTGTCAAAAACAAATTCTAAT
ACGAATGACATTACAAGAGGCAAAAGACTACGGCAGGCCATGAAGAGCAGTCTGTCCTCTTTGCCAGATAAACCATTTGAGCAGTATCATCAAGAATCTG
AGCAACTGTCTCCTGAATCATCTACTGATGAAGAGGTGCTTTGTCAAGATAGAGAGCTGTTCAACCCTGAGAAAAAGGAATCTATGGTCGATCTATTTCA
AGAAGCTTTAGCTACTAGTATTCTCAGCAACGAAGGTTCTCTATTCAGTGGCCCTAACCTTTCATGGTACTACAAGTAA
AA sequence
>Lus10005904 pacid=23140114 polypeptide=Lus10005904 locus=Lus10005904.g ID=Lus10005904.BGIv1.0 annot-version=v1.0
MSNYETRLLVEDELEEPDFRNDDGLTLPISAECIHNADKNQSNYVLSNSTATPIAKHSRPEAAVPRLNWAMKHEAWPIASEEAKSLNHLHETSRSGLKQT
RKSSKGVKGRAKRRFSFQFQPSIAQFHERSDCHWSEAIHTVKAETTVQGVICGSDGKNEARSEIWPTKLEPVENHVTGHSISELLDDIQDNSILSKTNSN
TNDITRGKRLRQAMKSSLSSLPDKPFEQYHQESEQLSPESSTDEEVLCQDRELFNPEKKESMVDLFQEALATSILSNEGSLFSGPNLSWYYK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10005904
[exp]
0 1
AT2G26590 RPN13 regulatory particle non-ATPase... Lus10040571
[exp]
2.0 0.8874
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Lus10037503
[exp]
2.2 0.8759
AT1G12700 RPF1 RNA processing factor 1, ATP b... Lus10008593
[exp]
5.2 0.8299
AT3G54980 Pentatricopeptide repeat (PPR)... Lus10019524
[exp]
6.0 0.8821
AT1G80150 Tetratricopeptide repeat (TPR)... Lus10019119
[exp]
8.7 0.8778
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10027928
[exp]
11.3 0.8772
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Lus10034164
[exp]
12.0 0.8498
AT1G09060 Zinc finger, RING-type;Transcr... Lus10037812
[exp]
13.0 0.8758
AT2G23890 HAD-superfamily hydrolase, sub... Lus10019962
[exp]
14.0 0.8682
AT5G36260 Eukaryotic aspartyl protease f... Lus10027001
[exp]
14.3 0.8177

Lus10005904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.