Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53080 437 / 5e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022387 [exp] 883 / 0 AT5G53080 536 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010800 [exp] 597 / 0 AT5G53080 579 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005905 pacid=23140116 polypeptide=Lus10005905 locus=Lus10005905.g ID=Lus10005905.BGIv1.0 annot-version=v1.0 ATGATACATTCAGAAGGTCTCCCTCGTCACTGGATTTCCAAAATGTTTGCATCTGTTGGTTCAGTAAATGCGGATACAGAATGCAAAGAAAATCTTGTTT CTTCACGAGTCTCATCTTCAAGGGACTCCGTGAGGTGGGAGACTAAAACATTTCCTGATGAGTCGAGTAATCAATCAGATGGTGCAGACAATTTCCTCGT GCAGCTGGAGGAGTTGTTTGATGAAATCAAATGGATGATTAAAATGGGAAGGAAACGTAATGCTAGAGACGTACTTCAGGCTAATTATGAACTTGTCAAA GAACAGATTGCTGGAGGTGCCAAAGGAATTCAACAGGCTGCTACTCTTGACATTGTAGCATTGGGGCACATGCTCCTCGGAAACCTGAAGATCGTTGGTC ACATCTTGAACACTGTAACGACCTTTTCCCTTGGTTTACTAGACGATGTCAGAACAGCACTTCAAATTGTGTTCTTGAAGTCTGACCAAAATACTTTTTG GGAACAGTTGCAGGAGATTATTGAGTTCTTAAATGATGACACACCAGTTCTGGATTTGGTGTTGACACATATGGGGAGCATGTATTCGGCCTTGGGAAAA TACAATAAATCTATGCTTGTGTATCAAAGAGCAATCAGGGTTTTAGAGGAAAAGTATGGAAAATCCAGCACTTTCCTTGTGTCACCTTTGCTGGGGATGG CAAAAAGTCTTGCTTCTGTAAAGAGGACTACGAAAGCGGTAGAAATCTACCACCACACAATAAATATCTTGGACTCAAGCTGTGGAGCTGAAAGTGAAGA TCTAGTTGTAGCTTTAACTGCTCTTGGAAGCCTTTTGGTTAAGGAAGGAAAAGCTACTGATGCAGAAAATCAATTTCTAAGAATCTTAAGCATTTACTCA AAATTATATGGGGAGAATGATGGAAGAGTGGGAATGGCCATGGCTTCTGTGGCCCATGCGAAGTGTGCATCAGGGAAAGCTGAAGAAGCCATAGAGTTAT ATAGAAGTGCTCTCGAGATACTAAAGTATGGAAGCCATGTGAATTTTGATGATGGTGTTGTGGAGAAGATGAAGGTAGACTTAGCCGAATTACTTCACGT GGTAGGAAGAGGAAATGAGGGCCGAGAACTGCTGGAGGAGTGCTTGTTAATTACCGAGAAATCTCAAGGGAAGGAACACCCTAGCTCAGTGCCTCACCTT ATGAACCTTGCAACCTCATATTCACAGTCGAAAAACTATGTTGAGGCAGAACGGCTTTTGAGAACAAGCTTGGAGATTAAGAGGAGAAATGGTAACCCTG AGGATCCGTCCATTACATTCCCAATGCTGCAACTTGCTGTGACCCTCTCTCATTTGAAAAGAGACGATGAAGCCGAACAACTAGCACTCGAAGCTCTGCA ACTTCGTCAGAAAGCATTTGGGAAGGATTCGATGCCTGCTGGGGAGGCTATGGATTGTTTGGTATCGATCCAGAGTAGATTAGGGAAAGCGGAATCAGAG TTACTGGAGATGCTGCAAAGGGTGCTGAAGATTCAGGAGGCTAACTTTGGTGTTGGGAGTGAAGAGACAATGCCAACTCTGAAAAAGATGGTGTTCTACT TTGACAAGCTCGGAAGGAAAGATGAGAAGCTCTTCATGCAGAGACGATTATCTGCCTTGAGAAATAAATTCAAACAAATGGTTGATTACTAG
AA sequence Show only first row Show all	>Lus10005905 pacid=23140116 polypeptide=Lus10005905 locus=Lus10005905.g ID=Lus10005905.BGIv1.0 annot-version=v1.0 MIHSEGLPRHWISKMFASVGSVNADTECKENLVSSRVSSSRDSVRWETKTFPDESSNQSDGADNFLVQLEELFDEIKWMIKMGRKRNARDVLQANYELVK EQIAGGAKGIQQAATLDIVALGHMLLGNLKIVGHILNTVTTFSLGLLDDVRTALQIVFLKSDQNTFWEQLQEIIEFLNDDTPVLDLVLTHMGSMYSALGK YNKSMLVYQRAIRVLEEKYGKSSTFLVSPLLGMAKSLASVKRTTKAVEIYHHTINILDSSCGAESEDLVVALTALGSLLVKEGKATDAENQFLRILSIYS KLYGENDGRVGMAMASVAHAKCASGKAEEAIELYRSALEILKYGSHVNFDDGVVEKMKVDLAELLHVVGRGNEGRELLEECLLITEKSQGKEHPSSVPHL MNLATSYSQSKNYVEAERLLRTSLEIKRRNGNPEDPSITFPMLQLAVTLSHLKRDDEAEQLALEALQLRQKAFGKDSMPAGEAMDCLVSIQSRLGKAESE LLEMLQRVLKIQEANFGVGSEETMPTLKKMVFYFDKLGRKDEKLFMQRRLSALRNKFKQMVDY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	0	1
					Lus10042808 [exp]	1.0	0.8457
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	3.7	0.8396
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	4.9	0.8066
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	5.3	0.7837
AT1G26180			unknown protein		Lus10031917 [exp]	6.3	0.7900
					Lus10024463 [exp]	8.5	0.7869
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10000138 [exp]	8.5	0.7224
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	9.2	0.8051
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	9.5	0.8137
AT1G60560			SWIM zinc finger family protei...		Lus10035898 [exp]	9.7	0.8052

Compare expression of checked genes

Lus10005905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.