Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26760 305 / 2e-97 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022386 [exp] 1092 / 0 AT5G26760 279 / 2e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010900 [exp] 670 / 0 AT5G26760 322 / 5e-103 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04181 [flax] [poplar] RPAP2_Rtr1 Rtr1/RPAP2 family
Representative CDS sequence Show only first row Show all	>Lus10005906 pacid=23140120 polypeptide=Lus10005906 locus=Lus10005906.g ID=Lus10005906.BGIv1.0 annot-version=v1.0 ATGTCAACGGAGCAGTCAACCTCTGTTGCTAAAGCTGTTTACAAGCTACAGCTCTCTCTATATGCTGGTATCCAAAATGAAGATCAGCTATTTGCAGCTG GGTCGTTGATTTCCCAGGGTGACTATGCTGACATTGTAGTTGAGAGGTCTTATATAAACCACTGTGGATACCCTCTTTGCAAGAACGAATTGCCTTCCGA ACGGCCTAGAAAGGGTCGGTACCGTATTTCTCTGAAGGAACATAAAGTTTATGACCTGCATGAGACATACATGTATTGCTCATCCAGTTGTCTTGTCAAC AGTCGAGCTTTTGCTGGGATCTTACAGGAACAGCGGGCCTTGGTTCAAAACCCAGCCAAGCTTGTGGAGATTTTAAGTCTCTTTGATACTTCTGGTTTGG AGTCTATAGAGAGTACATGGAAGAAACCTGATTTGGGAATGTCAAAATTAGTAATCCAGGAGAAAGGGGAAGTTAAAGCTGGTGAGGAGCCTCCGGTAGA GAACACTGGTCCGTCTAATGCAATTGAAGGGTATGTACCACGAAGAGATGGAAAATCTAAGACTCCATCGCCAGCAATAGGTCGCAAAGCTCATAATGCC AAATCGAGTTCAGAAAAATATTTTCTCAATGACTTGGACTTCACAAGTACAATCATCATCGGCGATGGATATTGCGTTTCAAAATCTCCTTCAAGCTTGC CATCGTCTAACTCAGAGGTGACTGACAAAGACGGAGAAGGAACTAGTGGAAAGTTAAATGTTCAGTCATCTAGTTCAACGAAGCCGAGCTCTGGTAAATT ACCTAGAAAGATGAAAGCAGGGAAGTCTAAAGCAGTGAAGACTCAAAGAGGAGCCGGGGATGTGGCTTCACCATCAAATCCTCAAACCACTTCCAGTTTG AATAATGGAGGAGCTGGAGAGGCAAGTGAAGTTAGTGAAGCATCTAATTTAGGCCAATCCAGGCTGAAGCCCTCTCTTAAGTCTTCTTGTTCAAAGAAAC TTGGTCGGTCAGTGACTTGGGCTGATGAGAATGCTGGGAGTTCAGATAGTGATGGTCTTTGTAATGTCAGGGAGATGAAAGATGACTGTCTATATACTTC TATATCTGATGAATCATACAAAGGAGATGATGAAGATAATTTGTTGCTTGAACCGGCAGAAGCCTGTGCAAAGGCTCTCAGTCAAGCAGCAGAAGCTGTT GCATCTGGACAGGTCGACGTCGCTGATGCCATGTCTGAAGTTGGATTGACAATATTGCCCCAAGCAAACAATATCGATCAGAATGATTCTGCAGATGATG ACAACACACAACGAGAAGATTCGGAAACTATTCAGTGGCCCGGAAAGCCTGGTATTCCTCAATCTGACATGTTCGACCCTGATGATATATTGTATGATAG TCCTCCAGAAGGATTCAGTTTGGAGTTATCCCCTTTTGCAACAATGTGGATGGCACTCTTCGCATGGGTAACCTCATCCTCCTTGGCTTACATATATGGG AAAGATGACAGCTCCCACGAGGATTATTTGTCAGTCAACGGAAGGGAGTACCCTCATAAGATTGTCTCACCAGATGGCTACTCTTCTGAAATCAAACGAA CTGTTGATGGTTGTCTAGCTCGTGCTTTACCTGCTGTGGCTGCTGATCTAAGGCTGCCAATACCAATTTCTACCTTGGAGCAAGGAGTGGGACGTCTGTT GAACACAATGACTTTTGTGGATGCAATTCCAGCATTCAGAACGAAGCAGTGGCAAGTCATAGCAATTCTCTTTATGGAAGCTCTCTCGATATGCCGAATT CCTGCTCTATCTTCTCACATAAGTAATCGAAGGGCGGTAAGTCACCAGGTGTTAGAGGGTGCTCGTATTGGTTCCGATGAGTACGCAGCGATGAAAGAGT TGATGATGCCTTTAGGACGAGTGCCTGGTTTTGCATCCCTAAGTGGAGCCTAG
AA sequence Show only first row Show all	>Lus10005906 pacid=23140120 polypeptide=Lus10005906 locus=Lus10005906.g ID=Lus10005906.BGIv1.0 annot-version=v1.0 MSTEQSTSVAKAVYKLQLSLYAGIQNEDQLFAAGSLISQGDYADIVVERSYINHCGYPLCKNELPSERPRKGRYRISLKEHKVYDLHETYMYCSSSCLVN SRAFAGILQEQRALVQNPAKLVEILSLFDTSGLESIESTWKKPDLGMSKLVIQEKGEVKAGEEPPVENTGPSNAIEGYVPRRDGKSKTPSPAIGRKAHNA KSSSEKYFLNDLDFTSTIIIGDGYCVSKSPSSLPSSNSEVTDKDGEGTSGKLNVQSSSSTKPSSGKLPRKMKAGKSKAVKTQRGAGDVASPSNPQTTSSL NNGGAGEASEVSEASNLGQSRLKPSLKSSCSKKLGRSVTWADENAGSSDSDGLCNVREMKDDCLYTSISDESYKGDDEDNLLLEPAEACAKALSQAAEAV ASGQVDVADAMSEVGLTILPQANNIDQNDSADDDNTQREDSETIQWPGKPGIPQSDMFDPDDILYDSPPEGFSLELSPFATMWMALFAWVTSSSLAYIYG KDDSSHEDYLSVNGREYPHKIVSPDGYSSEIKRTVDGCLARALPAVAADLRLPIPISTLEQGVGRLLNTMTFVDAIPAFRTKQWQVIAILFMEALSICRI PALSSHISNRRAVSHQVLEGARIGSDEYAAMKELMMPLGRVPGFASLSGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26760			unknown protein		Lus10005906 [exp]	0	1
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	1.0	0.9224
AT3G12590			unknown protein		Lus10001698 [exp]	1.7	0.9016
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	3.5	0.8821
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	3.7	0.9111
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	4.2	0.8795
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	4.6	0.8904
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	7.7	0.8627
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	8.0	0.8870
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	8.7	0.9015
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	8.7	0.8961

Compare expression of checked genes

Lus10005906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.