Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27800 426 / 9e-148 TAP38, PPH1 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) AT2G29380 95 / 4e-21 HAI3 highly ABA-induced PP2C gene 3 (.1) AT1G18030 83 / 3e-17 Protein phosphatase 2C family protein (.1.2) AT1G43900 83 / 4e-17 Protein phosphatase 2C family protein (.1) AT1G67820 82 / 1e-16 Protein phosphatase 2C family protein (.1) AT2G25620 80 / 4e-16 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G10740 80 / 4e-16 Protein phosphatase 2C family protein (.1) AT1G07430 76 / 1e-14 HAI2 highly ABA-induced PP2C gene 2 (.1) AT5G24940 76 / 1e-14 Protein phosphatase 2C family protein (.1) AT3G17250 72 / 1e-13 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022384 [exp] 861 / 0 AT4G27800 466 / 1e-163 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) Lus10009642 [exp] 83 / 3e-17 AT1G18030 469 / 1e-166 Protein phosphatase 2C family protein (.1.2) Lus10012962 [exp] 82 / 8e-17 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 82 / 2e-16 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10040270 [exp] 80 / 6e-16 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10020104 [exp] 78 / 1e-15 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 77 / 1e-15 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10042775 [exp] 79 / 2e-15 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10004703 [exp] 77 / 4e-15 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010600 [exp] 491 / 4e-173 AT4G27800 510 / 0.0 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) Potri.013G099400 [exp] 102 / 2e-23 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.010G199600 [exp] 97 / 9e-22 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.019G071600 [exp] 95 / 7e-21 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.015G043000 [exp] 92 / 4e-20 AT1G18030 439 / 8e-155 Protein phosphatase 2C family protein (.1.2) Potri.008G059200 [exp] 80 / 4e-16 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.018G115100 [exp] 76 / 6e-15 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.005G186001 [exp] 75 / 6e-15 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 74 / 1e-14 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 74 / 2e-14 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10005908 pacid=23140124 polypeptide=Lus10005908 locus=Lus10005908.g ID=Lus10005908.BGIv1.0 annot-version=v1.0 ATGGCTCTATTAGGGCCACACCAGCTCGAACGGCTCCCACTGACCAACCACCAACTTGGTCACTTCTCCACCGGCGGCCGTTTCTCCAGCCCACCCACCA CCGCTAACATACTTAGCACGGCTCAACATCACCCTCTTCCACTCCATCAATCCGCCAAAACCCTTCGTTGCTCAGCCATCGCCATAGACGCCGCTTCTAC TTTCTCCGATGTCGCCGGTGTCAGGTGGGGGTTCACTTCCGTCCAGGGCGTCCGTGAGGAGATGGAAGATGATATCGTCATTCGATCCGATGGCGGCCTT CACGGGTTCTCTTTCGCCGTTGTTCTCGACGGCCATGGCGGCTTCAATTCTGTCAACTTCCTCAGGGATGAATTGTACAAAGAGTGCGTGGCTGCTTTAC AAGGTGGGTCGCTATTGGGTGGGAAAGACTACAACGCCATTAAAGAGGCTCTGGAATCTGCGTTCGTCAACGTTGATTCGAAATTGTTAACCTGGCTGGA AATGAATCACGCCGAGGATGAATCTGGTTCGACTGCCACTGTTGTGATTATTGCAAGTGATAGGCTCGTCATTTCCCATATCGGGGACTCCAATGTGGTA TTGTCTCGTTCTGGTAAAGCAGAAGTGCTGACTGATCCTCATCGTCCATATGGAAGCAACAAGAGTTCCCTTCAAGAAATCAGAAGAATCAGAGAAGCAG GTGGATGGCAACTAGAGTCATGGATTCGTTTCCCTCTATCGTTTTTCTCTGTTCCAATGTTGCTTCAGCTTTCCCTGAATGTGGTCTATCATGAACGTCA CTGCACTGGTAGTTACTCATTATATTGTGATAGAGATGAAGCTTTGTATTACATTGGAAACTTACGTTTGATGCAATGCTTCCAGATCAACAATGGGAGG ATTTGTGGTGACATAGCTGTATCACGTGCATTTGGTGATATGAGGATGTTGCAGAAAGGAGTCCAGGAAGGTCGATGGACAGAGAAGTTTACTTCTAGAG TTCAATTCAATGGAGACTTGGTCGTTGCATATCCAGATATTTATCAAGTAACATTGGGTTCAGATGCAGAGTTTATACTATTAGCATCTGATGGCTTATG GGACTACATAAAAAGTTCAGATGCAGTTCAATTTGTTAGGGATCAACTTAAGCAACATGGAAATGTCCAGGTAGCCTGCGAAGAACTTGCAAGAGCAGCT CTGGATCGACGTTCACAAGACAACATTAGCATTATCATTGCCGATTTAGGGAGGACAGATTGGCAAACTGTGCTGGTTGAGCAGAAAAATGTTGTATTTG AACTAGGACAAGCTTTTGCTACGATTGGCATCGTCTCAGTTGGAATATGGATGACATGTCTGCTTTCTTTCTAG
AA sequence Show only first row Show all	>Lus10005908 pacid=23140124 polypeptide=Lus10005908 locus=Lus10005908.g ID=Lus10005908.BGIv1.0 annot-version=v1.0 MALLGPHQLERLPLTNHQLGHFSTGGRFSSPPTTANILSTAQHHPLPLHQSAKTLRCSAIAIDAASTFSDVAGVRWGFTSVQGVREEMEDDIVIRSDGGL HGFSFAVVLDGHGGFNSVNFLRDELYKECVAALQGGSLLGGKDYNAIKEALESAFVNVDSKLLTWLEMNHAEDESGSTATVVIIASDRLVISHIGDSNVV LSRSGKAEVLTDPHRPYGSNKSSLQEIRRIREAGGWQLESWIRFPLSFFSVPMLLQLSLNVVYHERHCTGSYSLYCDRDEALYYIGNLRLMQCFQINNGR ICGDIAVSRAFGDMRMLQKGVQEGRWTEKFTSRVQFNGDLVVAYPDIYQVTLGSDAEFILLASDGLWDYIKSSDAVQFVRDQLKQHGNVQVACEELARAA LDRRSQDNISIIIADLGRTDWQTVLVEQKNVVFELGQAFATIGIVSVGIWMTCLLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	0	1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	1.4	0.8927
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	1.4	0.9001
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	2.2	0.8617
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	2.4	0.8614
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	3.9	0.8653
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	4.2	0.8548
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	5.7	0.8566
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10022429 [exp]	6.5	0.8415
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	6.6	0.8651
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	9.5	0.8426

Compare expression of checked genes

Lus10005908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.