Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53070 244 / 4e-82 Ribosomal protein L9/RNase H1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022383 [exp] 406 / 4e-146 AT5G53070 249 / 2e-84 Ribosomal protein L9/RNase H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121228 [exp] 287 / 3e-99 AT5G53070 251 / 4e-85 Ribosomal protein L9/RNase H1 (.1) Potri.012G017300 [exp] 285 / 3e-98 AT5G53070 251 / 4e-85 Ribosomal protein L9/RNase H1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03948 [flax] [poplar] Ribosomal_L9_C Ribosomal protein L9, C-terminal domain PF01281 [flax] [poplar] Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005909 pacid=23140130 polypeptide=Lus10005909 locus=Lus10005909.g ID=Lus10005909.BGIv1.0 annot-version=v1.0 ATGGCTTATCTTCAGCATGGCAGAAGTGGCTTGCAGCAAATTCTTAGAGGAGCCAATGGCAGGATCTCCGATTCCGCGTTACCTACGTCGATATATGCCT GTCAGGGAATTCGGTTTAGGAAGCTAGAGGTTATTCTAACATCGAACATAGAGAAGCTTGGTAAAGCAGGTGAAACAGTGAAGGTTGCTCCTGGATATTT TCGCAACCACCTGATGCCTAAATTGCTGGCTGTACCTAATCTTGACAAGTTTGCTCATCTAATCAGAGAGCAGCGCAAGTTGTATCAGCAAGAGGAGGAA GAAGAGGTTAAGAAGGTGGTTGATGATACAAAGGAAGATCGAATGAAAGAATTCGAAACAGCTGCAAAGCGCTTAGATAAATCCCATGTGACATTTAGGG TGGGAATCGATGCTCAGAAGTTCAAAGCTCGTGCCTCAAAGGATGAACCGATAGTAATTCAGGCACCAGTGACGAAGGATGATATTGTAAAAGAGGTTGC AAGGCAGCTGAATGTACTGATTGATCCAGACAACCTTCATCTGCCTACACCGTTGACGACATTTGGGGAGTATGAGGTGCCTATGCGTCTGCCGAGGTCA ATCCCATTGCCAGAAGCAAAAGTTAACTGGACGCTGACTGTTAAAATCAGGGGCAAATAG
AA sequence Show only first row Show all	>Lus10005909 pacid=23140130 polypeptide=Lus10005909 locus=Lus10005909.g ID=Lus10005909.BGIv1.0 annot-version=v1.0 MAYLQHGRSGLQQILRGANGRISDSALPTSIYACQGIRFRKLEVILTSNIEKLGKAGETVKVAPGYFRNHLMPKLLAVPNLDKFAHLIREQRKLYQQEEE EEVKKVVDDTKEDRMKEFETAAKRLDKSHVTFRVGIDAQKFKARASKDEPIVIQAPVTKDDIVKEVARQLNVLIDPDNLHLPTPLTTFGEYEVPMRLPRS IPLPEAKVNWTLTVKIRGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	0	1
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	1.7	0.8962
AT1G64385			unknown protein		Lus10033958 [exp]	2.4	0.9006
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10038835 [exp]	2.6	0.8770
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	3.0	0.8754
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	5.1	0.8975
AT3G62940			Cysteine proteinases superfami...		Lus10040897 [exp]	6.0	0.8701
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	6.3	0.8738
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10017003 [exp]	9.3	0.8511
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019880 [exp]	14.1	0.8599
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	14.8	0.8885

Compare expression of checked genes

Lus10005909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.