Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27780 390 / 2e-135 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 385 / 6e-134 ACBP1 acyl-CoA binding protein 1 (.1) AT4G24230 88 / 3e-19 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT2G03430 76 / 9e-16 Ankyrin repeat family protein (.1) AT5G27630 71 / 4e-13 ACBP5 acyl-CoA binding protein 5 (.1) AT3G05420 66 / 1e-11 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G66055 64 / 5e-11 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G37500 62 / 3e-10 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G12320 58 / 4e-10 ankyrin repeat family protein (.1) AT5G40160 60 / 5e-10 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022382 [exp] 605 / 0 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10007764 [exp] 93 / 7e-21 AT4G24230 141 / 1e-38 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Lus10018702 [exp] 93 / 2e-20 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10020272 [exp] 76 / 1e-14 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 73 / 4e-14 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10004499 [exp] 72 / 1e-13 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10007432 [exp] 66 / 7e-12 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10015176 [exp] 66 / 3e-11 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 65 / 3e-11 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010200 [exp] 418 / 1e-146 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.012G017700 [exp] 416 / 5e-146 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.002G120200 [exp] 103 / 9e-25 AT4G24230 113 / 3e-28 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.014G018700 [exp] 101 / 5e-24 AT4G24230 133 / 2e-35 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.013G062000 [exp] 74 / 2e-14 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.013G018800 [exp] 71 / 3e-13 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G161300 [exp] 69 / 4e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.005G026900 [exp] 67 / 5e-12 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.001G295200 [exp] 66 / 8e-12 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 66 / 1e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein
Representative CDS sequence Show only first row Show all	>Lus10005910 pacid=23140111 polypeptide=Lus10005910 locus=Lus10005910.g ID=Lus10005910.BGIv1.0 annot-version=v1.0 ATGCTAGAGTGGCAGCAATTGCTCCAGTCCATAATCCTCGGCCTCATCTTCTCTTACCTCCTCGCTAAGCTCATCTCAATCGTCGTCGCCTTCAAAGACG ACAACCTTACCATTATACGCAATCCCTCTCCCGCTTCCTACCAACCACTGAAATCCGGGGACGAAAGCTCTGGAGATTTCCCCGAGGGAGATTCCATCGC TGCTGAGCTGGGCAGTGTCAGGAACGAAAGCGCTGGTCACGGTGATTTCGATGATGATGACGAGGAGGACGACGACGACTGGGAAGGTGTAGAGAGCACC GAGTTGGATGAGTTCTTCAGCGCAGCCTCGGCATTTGTTGCGGCGGCGGCTGCTGACCGGCTTTCTCAGAAGGTGTCGACGGATATGCGACTGCAGCTTT ATGGCTTGTATAAGATTGCCACTGAAGGACCTTGCACAGTTCCCGCTCCTTCTGCTCTCAAAATGACTGCACGTGCCAAGTGGACAGCGTGGCAGAAATT GGGTACTATGTCACCAGAAGAGGCAATGGAAAGATACATTGACTTAGTTTCAGAGATTTACCCTGCTTGGGATGCTGGTTCAGCTGCGAAACCCAGAATT GGAGGGGGTGATGTACGGACCAATGATTCCCAAGGGCCAATGGGACCAGTTTTCAGCACCTTTGTTTATGAGGAAGAATCTGGGAATGAGCTGAAAATGG ATGCTGTTCATGCATTTGCCAGAGAAGGAGATGCAGATAATTTGCTGAAATCCATTAATCATGACCTTTCTGTCAACTTGAAAGATAGTGAAGGCCGGAC CCCTCTGCACTGGGCCGTGGATCGTGGTCACCTTAACATTGTGGAACTGCTTGTTGAACGAAATGCTGATATAAATGCCAAGGACAATGAAGGGCAAACA GCTTTGCACTATGCTGTGGTATGCGATAGAGAAGGGATTGCCGAACTCCTAGTGAAGCAAAATGCCAACGTAGACGAAAAGGATAATGACGGAATGTCTG CTAGAGAACTGTGTGAGTCGAACTGGTCCTGTCTCCAGAAAGTTGTAGCCACAGAATGA
AA sequence Show only first row Show all	>Lus10005910 pacid=23140111 polypeptide=Lus10005910 locus=Lus10005910.g ID=Lus10005910.BGIv1.0 annot-version=v1.0 MLEWQQLLQSIILGLIFSYLLAKLISIVVAFKDDNLTIIRNPSPASYQPLKSGDESSGDFPEGDSIAAELGSVRNESAGHGDFDDDDEEDDDDWEGVEST ELDEFFSAASAFVAAAAADRLSQKVSTDMRLQLYGLYKIATEGPCTVPAPSALKMTARAKWTAWQKLGTMSPEEAMERYIDLVSEIYPAWDAGSAAKPRI GGGDVRTNDSQGPMGPVFSTFVYEEESGNELKMDAVHAFAREGDADNLLKSINHDLSVNLKDSEGRTPLHWAVDRGHLNIVELLVERNADINAKDNEGQT ALHYAVVCDREGIAELLVKQNANVDEKDNDGMSARELCESNWSCLQKVVATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	0	1
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	1.7	0.9232
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	2.0	0.9114
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Lus10020953 [exp]	3.2	0.8896
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	7.9	0.8967
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	8.4	0.8836
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	10.2	0.8717
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	10.8	0.8916
AT1G19130			unknown protein		Lus10039920 [exp]	14.5	0.8441
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	17.3	0.8841
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	18.2	0.8770

Compare expression of checked genes

Lus10005910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.