Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27790 132 / 1e-36 Calcium-binding EF hand family protein (.1) AT5G08580 82 / 6e-18 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022381 [exp] 298 / 3e-101 AT4G27790 291 / 3e-97 Calcium-binding EF hand family protein (.1) Lus10017370 [exp] 79 / 1e-16 AT5G08580 437 / 5e-153 Calcium-binding EF hand family protein (.1) Lus10010165 [exp] 78 / 2e-16 AT5G08580 435 / 5e-153 Calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010300 [exp] 152 / 2e-44 AT4G27790 321 / 1e-108 Calcium-binding EF hand family protein (.1) Potri.005G087600 [exp] 74 / 5e-15 AT5G08580 539 / 0.0 Calcium-binding EF hand family protein (.1) Potri.007G076300 [exp] 69 / 1e-13 AT5G08580 536 / 0.0 Calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005911 pacid=23140122 polypeptide=Lus10005911 locus=Lus10005911.g ID=Lus10005911.BGIv1.0 annot-version=v1.0 ATGGCAAGGGCGGTAGGAATTATATTCTATGCCCTCCTTCGTTCCTGGCGCCTTTCTTCTCTTTGTTACCTTCTTCGCCGCCGACGATGCCGACACTCAA CGGCGCCACCGGAAACGCCAAATTTTGATCCGCTGGTAGAGAAAATGCAGCAGGAGAAGGGGGCGGAGGTGGGACAGGAGTCGTTGGTGGTGTATTTCGA GGAGGAAGGGAAGTTCAACATGACGAAGAGGCTGGAGGTGTTGCCCGGCGGTGGACAAGATAAGCTTTCACTCAGGAGATGGAGGATTGGAATATGGGTC AGGCGGTTGATCGCGAAAAATGAAATGAGACATGGTCAAGCTGGATGGTGGATGGAGTTATTCAAAATCGCAGATGTGAATGGCAATGGAGGACTCGATT TCTACGAATTTAACAACTTCTTGCACCCAGAGGACAGCCAGAACAAGGATATCCAGATATGGTTGCTCAAAGGAAATATTAAGAGAATGGATGAAGATAG GGGATTCAAGGTTTACGTTGAATTTGAAAAGATAACAGTCCCTACTGCTCAACACAAATTCACACAACTTGATATCGACCATGACAAGGTGCTGAGTGTG GAGGAATTGCTGCCCATACTTCCATACCTGAAGCCTGGAGAACTCATTTATGCCAAATTCTACGCCCATTATTTGATTAGAGAGATTTCTTGTAGTGTGA GCCAGCTTTGGTCAATTATGGCATATGAGCTAGCTTGA
AA sequence Show only first row Show all	>Lus10005911 pacid=23140122 polypeptide=Lus10005911 locus=Lus10005911.g ID=Lus10005911.BGIv1.0 annot-version=v1.0 MARAVGIIFYALLRSWRLSSLCYLLRRRRCRHSTAPPETPNFDPLVEKMQQEKGAEVGQESLVVYFEEEGKFNMTKRLEVLPGGGQDKLSLRRWRIGIWV RRLIAKNEMRHGQAGWWMELFKIADVNGNGGLDFYEFNNFLHPEDSQNKDIQIWLLKGNIKRMDEDRGFKVYVEFEKITVPTAQHKFTQLDIDHDKVLSV EELLPILPYLKPGELIYAKFYAHYLIREISCSVSQLWSIMAYELA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27790			Calcium-binding EF hand family...		Lus10005911 [exp]	0	1
					Lus10003536 [exp]	2.2	1.0000
					Lus10011425 [exp]	3.5	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	4.2	1.0000
					Lus10009727 [exp]	9.2	1.0000
					Lus10022214 [exp]	9.9	1.0000
					Lus10029107 [exp]	11.8	1.0000
AT1G04500			CCT motif family protein (.1)		Lus10014478 [exp]	13.0	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007069 [exp]	13.6	1.0000
					Lus10011642 [exp]	14.0	1.0000
					Lus10028667 [exp]	14.3	1.0000

Compare expression of checked genes

Lus10005911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.