Plant FIBer expression Database

Lus10005913 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72320 698 / 0 APUM23 pumilio 23 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022388
[exp]
1262 / 0 AT1G72320 673 / 0.0 pumilio 23 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G073000
[exp]
810 / 0 AT1G72320 884 / 0.0 pumilio 23 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00806 PUF Pumilio-family RNA binding repeat
Representative CDS sequence
>Lus10005913 pacid=23140117 polypeptide=Lus10005913 locus=Lus10005913.g ID=Lus10005913.BGIv1.0 annot-version=v1.0
ATGGGTAGGGATAATAAATTCTACAAACAGGGTTCAAGGGAAAAGGGAATGGGGAAAAAATCCGCCTCTAGCTTTCAACGGGATGATGTAAACAACAAGT
CAGACGGGCACGCTGGAACTACGAGGCGTCACGATTCATTCAGCTCAACACACCCACATCATAATGTTATCAGGAAAGAAATTGATCCTGAAACAAAAAC
GTACTTCACGGAGATTGCGAATCTTTTCGAAAGCAGTGGAATTGACTTAGAGGAGCGATCAGTAATTTGCAGTAATGCTCTTGAAGAAGCCAGGGGGAAA
GAATTTGAGCTGGCAACTGATTATATAATAAGCCATACTATGCAAAGTCTCCTAGAAGGATGCGATGTGGACCATCTTTGTGGCTTTCTCCGAGGTGGCG
CAGAGTTGTTCCCTGTAATAGCATCTGATAGATGTGGTTCTCATGTCGCTGAGACAGCACTCAAGTCTTTGGCTACGTTTGTTCAAGACGATGCTAACTA
TTCTGCCATTGAAGAGACCTTATCCCTCATTTGCCAGGTTATTGCGGCCAATCCTGCTGATATGATGTGTAGCCAACATGGATCTCATGTTCTCCGGACA
CTTCTATGTCTTTATGGGGGCGCACGGTTGGATTCCCCAGAATTTCATGGAGCGAAGTCACCCTCGATTTTGGCTAATCGTTTAAATCTACAAGCAACTC
ATATGCCTGGCACTGATTCAGTTCATATTCACCAGGGATTTCCTGGTCTACTAAAATCTCTTGTGTCAGCGATGTTGAAACATAATGGAGAAGGCATCCG
TGTGGATCAATGCAGCAGTTTAGTTCTTCAGACCGGAATGCTTCCACTAGCACTGAAGTTGCTTGCGGGAAATGATGAAGAATTATCGCATGTAATTCCA
ATCCTTCTTGGCTACAAAAGCCAAAACTTAACTGAAGGAAACTTGATAGACTTGTCCATTGTAAGAAAGGTCGTGGAACTCATGAAAGAAACTGCATTTA
GCCACTTGATGGAGGTAATATTAGAAGTGGCTCCTGAAAGTTTGTACCAGGAGCTGTTCATGAAAGTTTTTAGAAATTCGCTTTATAAGCTTTCATCAGA
TAGATGTGGTAACTTCGTTGTTCAAGCGTTGATTTCTCACTCAAGAGATGAAAAACAGGTGAAGTTCATATGGGAAGAACTTGGTCCAAAATGCAAAGAT
CTACTAGAAATGGGGAGGTCAGGAGTAATTGGGAGGTCAGGAGTAATTGCTTCCTTCATTGCTGCTAGTCAAAGACTTCATACTTCTGAACGGGAGTGCT
GCCAGGCCCTTGCCACTGCAGTGAGTGCCGGATCGGACGAGTCTCCAAGATGGATTATTCCGAGAATTTTATTTCTTGAAAATTATTTGAGATGCGAGGA
AAAGTCCTCTTGGGGATGGCCAAATGGTTTTAGGATGCATGTTATGGGTTCCCTCATTCTGCAGGCGATTTTTAAATTTCCAGCTGAGTTCATACAAGGT
TATATTACAAGTATGACATGCATGGAAGTTGAACATGTCCTTGAAGTTGCAAAGGATGGCGGTGGAGCACGTGTCCTCGAGGCATTCTTAAATTCAGCTG
CCTCTGGAAAGCAGAAGCGCAGAGTTATTTCCAAGCTGAGAGGACATTTTGGAGAGCTGGCCAAGAATCCATCTGGTTGCTTTACTGTTGAGAAGTGCTT
TACCGTGAGTAATTTATCACTAAGAGAGGCCATGGCGTCAGACTTGGTAGCAGTTCAAGCAGAGCTGGAACATTCCAAGACGAAGCAAAGTCCGTACCTG
TTAAGGAAACTGGATATTGATGGGTTTGGGAAGCGGCCTGATCAATGGAGATTGAAACAAGAGTCAAAACAAGCTGCTTACAAGGACTTTTGTGCAGCAT
TTGGGAAAACTGAGGATGCAAGTAAAGGATCATCAGACCTGGGAGTGGAGGTGGAGGAAGAAGCGGATAATGCTGTTCTAAAAGATGGGAAGAAAGCAAA
GAAAAAGAAGGTTGAAGCAGAGGCAGTGGCCAAAGCAACAGAGAGTGGAGGTCATGAAGAGAAAGTACCATTTCTATCGGAGGAGATGCAGGGAAAGAAA
CGGAAGGGGAAGAATGGTCCCTCGAAACCTTGGAAGAAGATTAAGACATAA
AA sequence
>Lus10005913 pacid=23140117 polypeptide=Lus10005913 locus=Lus10005913.g ID=Lus10005913.BGIv1.0 annot-version=v1.0
MGRDNKFYKQGSREKGMGKKSASSFQRDDVNNKSDGHAGTTRRHDSFSSTHPHHNVIRKEIDPETKTYFTEIANLFESSGIDLEERSVICSNALEEARGK
EFELATDYIISHTMQSLLEGCDVDHLCGFLRGGAELFPVIASDRCGSHVAETALKSLATFVQDDANYSAIEETLSLICQVIAANPADMMCSQHGSHVLRT
LLCLYGGARLDSPEFHGAKSPSILANRLNLQATHMPGTDSVHIHQGFPGLLKSLVSAMLKHNGEGIRVDQCSSLVLQTGMLPLALKLLAGNDEELSHVIP
ILLGYKSQNLTEGNLIDLSIVRKVVELMKETAFSHLMEVILEVAPESLYQELFMKVFRNSLYKLSSDRCGNFVVQALISHSRDEKQVKFIWEELGPKCKD
LLEMGRSGVIGRSGVIASFIAASQRLHTSERECCQALATAVSAGSDESPRWIIPRILFLENYLRCEEKSSWGWPNGFRMHVMGSLILQAIFKFPAEFIQG
YITSMTCMEVEHVLEVAKDGGGARVLEAFLNSAASGKQKRRVISKLRGHFGELAKNPSGCFTVEKCFTVSNLSLREAMASDLVAVQAELEHSKTKQSPYL
LRKLDIDGFGKRPDQWRLKQESKQAAYKDFCAAFGKTEDASKGSSDLGVEVEEEADNAVLKDGKKAKKKKVEAEAVAKATESGGHEEKVPFLSEEMQGKK
RKGKNGPSKPWKKIKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72320 APUM23 pumilio 23 (.1.2.3) Lus10005913
[exp]
0 1
AT2G44880 Pentatricopeptide repeat (PPR-... Lus10003422
[exp]
5.5 0.7968
AT5G15550 Transducin/WD40 repeat-like su... Lus10041271
[exp]
9.0 0.7972
AT5G57250 Pentatricopeptide repeat (PPR)... Lus10036510
[exp]
14.1 0.8299
AT4G15820 unknown protein Lus10043415
[exp]
17.7 0.8196
AT3G24000 Tetratricopeptide repeat (TPR)... Lus10039117
[exp]
33.2 0.7582
AT3G07300 NagB/RpiA/CoA transferase-like... Lus10016349
[exp]
53.1 0.7153
AT1G19100 Histidine kinase-, DNA gyrase ... Lus10001240
[exp]
54.5 0.7533
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10012051
[exp]
54.8 0.7197
AT5G66540 unknown protein Lus10001234
[exp]
70.4 0.7876
AT3G51980 ARM repeat superfamily protein... Lus10038535
[exp]
87.7 0.7354

Lus10005913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.