Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53920 167 / 4e-50 ribosomal protein L11 methyltransferase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022389 [exp] 338 / 3e-116 AT5G53920 312 / 4e-104 ribosomal protein L11 methyltransferase-related (.1) Lus10034058 [exp] 88 / 1e-22 ND / Lus10013509 [exp] 86 / 2e-21 ND / Lus10020608 [exp] 86 / 2e-21 ND / Lus10042579 [exp] 85 / 3e-21 ND / Lus10003671 [exp] 84 / 9e-21 ND / Lus10000302 [exp] 84 / 2e-20 ND / Lus10000976 [exp] 82 / 5e-20 ND / Lus10008376 [exp] 81 / 6e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116100 [exp] 201 / 4e-63 AT5G53920 341 / 1e-115 ribosomal protein L11 methyltransferase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06325 [flax] [poplar] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Lus10005914 pacid=23140121 polypeptide=Lus10005914 locus=Lus10005914.g ID=Lus10005914.BGIv1.0 annot-version=v1.0 ATGTTTGAGAGGGCAGTGTCCGGGGCGGATGTTGCTCCAGGGTACATGGACTGGTACCTCGAGCACAGTCACCCGCGCATTGTAGCGCCGGCTAACCCCG GTGTAGGCGTCTCAGCTGAGCTTGAATCGTTTTCAGATGCTTTACTGGATTTTGGAGCGAGTTCCACCACTGTGAACGATGAAGAAAATGAAGAAGGAGA TAGTGAAGTGTCTGATGGGTTTAATGAGGTGGTTATTGATTCCATATTTCTGGAATGCCAAGATGTCAAAGCGTGCATTCTCAAAGCTGCCAATGCTGCT GGTTTGAATAAGACACCAAGCTATGATGTTAAGACGGGTGAACAGGATGACTGGGTTCGGAAATATCTGGAATACTTTGAGCCACTTGAAGTTACCGAGG GGATTTGGATTGTATCCGAGTGGAAATCTCCCCCGTTGATCAGAGGAGGAGAATGTTTCTTGGACTATGGAACAGGTTCTGGAATTCTTGGAATTGCAGC ACTTAAGTTTGGTGCTGCTACGTCAGTTGGAATTGACGTGGATGAGCAAGCAATAACGGCAGCACGTAATAATGCTGCTCTGAACAACATTGGACCGGAG ACAATGAAGTTACACCTAGTTTCTGGCAAAATGGATTCAAGGACAGACAGAGTTGTGAGAGGAAAGAGCTCGAACGAAACTGGAGTGTTCCCGGAAACAT AA
AA sequence Show only first row Show all	>Lus10005914 pacid=23140121 polypeptide=Lus10005914 locus=Lus10005914.g ID=Lus10005914.BGIv1.0 annot-version=v1.0 MFERAVSGADVAPGYMDWYLEHSHPRIVAPANPGVGVSAELESFSDALLDFGASSTTVNDEENEEGDSEVSDGFNEVVIDSIFLECQDVKACILKAANAA GLNKTPSYDVKTGEQDDWVRKYLEYFEPLEVTEGIWIVSEWKSPPLIRGGECFLDYGTGSGILGIAALKFGAATSVGIDVDEQAITAARNNAALNNIGPE TMKLHLVSGKMDSRTDRVVRGKSSNETGVFPET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53920			ribosomal protein L11 methyltr...		Lus10005914 [exp]	0	1
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	1.0	0.8687
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	5.9	0.8313
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	7.2	0.8455
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	8.8	0.8412
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	11.7	0.8299
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	14.1	0.8211
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	16.2	0.8245
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	17.3	0.8229
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	17.7	0.8231
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	20.2	0.8043

Compare expression of checked genes

Lus10005914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.