Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53060 576 / 0 RNA-binding KH domain-containing protein (.1.2) AT5G15270 173 / 5e-47 RNA-binding KH domain-containing protein (.1.2) AT5G46190 131 / 4e-32 RNA-binding KH domain-containing protein (.1) AT1G51580 130 / 6e-32 RNA-binding KH domain-containing protein (.1) AT4G18375 129 / 1e-31 RNA-binding KH domain-containing protein (.1.2) AT1G14170 117 / 4e-28 RNA-binding KH domain-containing protein (.1.2.3) AT5G64390 115 / 1e-26 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT2G22600 101 / 3e-22 RNA-binding KH domain-containing protein (.1) AT3G04610 90 / 1e-18 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT5G09560 65 / 7e-11 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022390 [exp] 963 / 0 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 173 / 5e-46 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 165 / 4e-43 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005232 [exp] 162 / 9e-43 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 159 / 8e-42 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 152 / 6e-39 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10036767 [exp] 151 / 7e-39 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 149 / 5e-38 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10037163 [exp] 148 / 2e-37 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011100 [exp] 706 / 0 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 692 / 0 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 187 / 4e-51 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 159 / 5e-42 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 154 / 3e-40 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 150 / 3e-38 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 145 / 7e-37 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.007G116300 [exp] 144 / 6e-36 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.004G066100 [exp] 140 / 3e-35 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 137 / 6e-34 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10005915 pacid=23140123 polypeptide=Lus10005915 locus=Lus10005915.g ID=Lus10005915.BGIv1.0 annot-version=v1.0 ATGACTCGACCGGTAGGACAAAACCTCGTTACAACAACCATCAATACTCTCCCGCCGCCGCCGCAGCCAACTCCCACCACAACAACAACGGAAGCCGGCA AAGACGACCGCATACACCTCATGCGAATTGAGATTTCTGATACGAGACGTAGGGACCCTGAAGGAAGAATCCCCCCTTTCTCTCCTGCCCAAGAGGCACT TTCCCTCATACACGAGAGGATTCTCGAGAGTGATGCTGAGTTTGGTGGTGTGGGCGGCGGATATGGTAACGACGAGGAGGAGTACGGTGGCGGAAGAGGT GGAGGAGGCGGAGGCGGTGGGAATACCAGAGTGGCTACTAGATTGGTGGTTTCAAGGATGCATGTTGGGTGTTTGTTAGGGAAAGGTGGGAAGATCATTG AGCAAATGAGGATGGAGACAAAGACCCAGATTAGGGTTTTGCCTAGAGATCATACCTTGCCTCGTTGTGTTTCCATGTCTGAGGAGATTGTTCAGGTTCT AGGTGATGCAAATAATGTAAAAAGTGCTATTGCAATAATATCATCACGATTGAGGGAGAGCCAGCATCGTGACCGCAGTAATTTCCAAGGGAGAATACAT TCTCCTGAAAGTGCTTTCCCGGATGATGATTATGTTTCTCACATGAATAATGCAGCTAGGCGGTCATCTTGCGATGGCCACACTTTTGGACCACGAAGTT CGGGCACCAATCATAGAAGCAATAATTATTCTTCACGGATATCTGGATATGGTTTGGAATCTGGCTCTGCATCTTGCTCTGAACTTGTCTTCCGACTGCT TTGCCCAATGGGTACGATTAACAGAGTAGTTGGAGAGACAGATGGAATCTTGCAACTTCTTGAAAATGAGATTGGTGTAGACGTAAAGGTTTCTGATCCT GTGTCTGGGTCAGATGAACAGATCATCACCATATCATCTGAAGAGGGTCCTGATGATGAGTTGTTCCCTGCGCAAGAGGCCTTGTTACATATTCAGACTC GAATCGTCGACCTTGTTCCAGATCAAGACTCTGTTATAAAAACCAGGCTACTTGTACCAAATAGTGAAGTTGGTTGTCTGGAGGGAAGAGAGTCTTTGTC AGAAATGGAAAGAGTAACTGGTGCAAAAGTACAGATCTTGGCAAAGGAGAAACTTCCTGCCTGTGCATCAGGGGTCGATGAGCTTGTTCAGATAGAAGGG GAAATAAAATCAGCTCGAGAAGCTCTTGTCGAAGTGACATCGAGATTGCGAAGTTACTTGTACAGAGACTTCTTCCAAAAGGATACACCGCCTGTTTCTA CTCATGGCTCTACTGGGAGGGGTTTACCCGCGGAAGCGGCTTCGTCAAATAACGTGACTCCTGCCGAAAGTCACAGTCCAGCTGAACCTTCTGCAGCATC CTATCAGACAGCTCAACAAGCATCAACACCTCCATTGTCCAAGGATTCTGGTGGATCAGTTGCTGAAACAGCCAGGCAGAATGAAAATGCAAGGCGTGAT GATGTGCCAGCTTCAACGAACAGAATCCCTGTGACACTTGTGACTAGGAGCATTCTTGAAGTAGTTATACCTGAGTACGCAGTTCCCAAGCTGGTAGCAA AATCCAAAAACAAACTTACACAGATCAGTGAGTTGTCTGGAGCAAACGTTACTCTCTTAGAAGACAGTCTAGATGGGACTGAAAAGATAATCCGAATATC TGGTACGCCAGAGCAGGCAGAAAGAGCCCAAAGCTTACTCCAAGGCTTCATATTGAGTACACAAGAAGATGGACCTTGA
AA sequence Show only first row Show all	>Lus10005915 pacid=23140123 polypeptide=Lus10005915 locus=Lus10005915.g ID=Lus10005915.BGIv1.0 annot-version=v1.0 MTRPVGQNLVTTTINTLPPPPQPTPTTTTTEAGKDDRIHLMRIEISDTRRRDPEGRIPPFSPAQEALSLIHERILESDAEFGGVGGGYGNDEEEYGGGRG GGGGGGGNTRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRVLPRDHTLPRCVSMSEEIVQVLGDANNVKSAIAIISSRLRESQHRDRSNFQGRIH SPESAFPDDDYVSHMNNAARRSSCDGHTFGPRSSGTNHRSNNYSSRISGYGLESGSASCSELVFRLLCPMGTINRVVGETDGILQLLENEIGVDVKVSDP VSGSDEQIITISSEEGPDDELFPAQEALLHIQTRIVDLVPDQDSVIKTRLLVPNSEVGCLEGRESLSEMERVTGAKVQILAKEKLPACASGVDELVQIEG EIKSAREALVEVTSRLRSYLYRDFFQKDTPPVSTHGSTGRGLPAEAASSNNVTPAESHSPAEPSAASYQTAQQASTPPLSKDSGGSVAETARQNENARRD DVPASTNRIPVTLVTRSILEVVIPEYAVPKLVAKSKNKLTQISELSGANVTLLEDSLDGTEKIIRISGTPEQAERAQSLLQGFILSTQEDGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53060			RNA-binding KH domain-containi...		Lus10005915 [exp]	0	1
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	4.8	0.8575
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	17.6	0.7391
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	18.1	0.7894
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	26.4	0.7805
AT3G42170			BED zinc finger ;hAT family di...		Lus10005558 [exp]	28.6	0.6866
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	28.6	0.7882
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	30.4	0.7749
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	32.7	0.7878
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10030230 [exp]	40.4	0.7552
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	41.1	0.7740

Compare expression of checked genes

Lus10005915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.