Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53050 489 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 51 / 6e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 51 / 8e-07 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 48 / 8e-06 ATSEH soluble epoxide hydrolase (.1) AT2G26750 47 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 45 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022392 [exp] 790 / 0 AT5G53050 503 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10041790 [exp] 52 / 4e-07 AT3G51000 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 52 / 4e-07 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037559 [exp] 51 / 8e-07 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 50 / 2e-06 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 48 / 7e-06 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 48 / 7e-06 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 48 / 9e-06 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 45 / 6e-05 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017100 [exp] 557 / 0 AT5G53050 516 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.015G011300 [exp] 530 / 0 AT5G53050 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.005G081000 [exp] 56 / 2e-08 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 54 / 1e-07 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 50 / 1e-06 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 50 / 2e-06 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 49 / 2e-06 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 49 / 2e-06 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 49 / 3e-06 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10005918 pacid=23140125 polypeptide=Lus10005918 locus=Lus10005918.g ID=Lus10005918.BGIv1.0 annot-version=v1.0 ATGCCCTTTTGCGAGGTCTCCAAGTACCAGCATCAGGATCCCCCCGATTCCCCTTCTTCCCATGACAACATCAATGGCGGCCTCAAGATTTCTTACAGGA CCTACGGCCGCGGTCCAACCAAAGTTCTTCTCATCATTGGATTGGCGGGTACTCATGATTCCTGGGGTCCTCAGATTAAGGGCCTTACCGGCACCGTTTT CCCCAATAACGAAATTCATCCGGTTGACCTCGCCGACGACGACGACGGCATATCCGCCGATGGTTTCGAGGTTTGTGCTTTCGACAATCGTGGAATGGGT CAGAGCTCCATCCCCGTTGAACGATCCCAATACACAACGGCAATAATGGCCAAGGATGCAATTGCGTTAATGGATCATTTAGGCTGGAAAAAAGCTCACG TCTTTGGGCACTCGATGGGGGCTATGATATCTTGCAAGTTAGCAGCAATGGTTCCGGATCGAGTCTTGTCATTGGCTTTGCTCAATGTAACCGGTGGGGG ATTCGAATGCTTCCCAAAGCTTGACCGTCGAACAATGTCAGTTGCTCTCCGGTTCATGAAGGCAAAGACGCCCGAGCAAAGAGCTGCTGTCGATCTTGAC ACCCATTACACTAAGGAATATCTGGACGAACTTGTTGGCTCTAGTACTAGGCGGCAGATTTTGTATCAAGATTATGTAAAAGGCATATCATCCACCGGGA TGCAGTGCAAATATGGGTTTGACGGTCAAATTAATGCATGTTGGACGCATAAGGTGACGAGATCCGACATCGAATCAATCCGCAGTGGAGCTTTTCTTGT ATCGGTCATTCATGGCAGGTATGACATCATTGCACAAATATATTACGCAAGGAGATTAGCTGAGAAGCTGCAGCCTGCCTCTAGAATGGTAGATCTCCAT GGTGGCCATCTAGTGAGTCACGAGAGGACTGCAGAGGTGAATCAAGCTCTTAAAGACTTGATAAAGGCTTCAGACGCGGGAACCAGTCCACATGATTGGA CAAACATAGTCCAGGAGAGTTCCTCCTCCGGTTGGTTGCTGGGGAGGATAACATCAACTGAGGGCAAAAGTAAAGAAGGTTGCGTTGATCCCGGGTCTTC ATCTGGAGTGTTTACGAGACTATATCCATGCTTTGTATATTTACTGAGTCTGTTTGTGTTGGCATTTGAATTTATGAGCAAAGCTCATAGAAGGATAAGA CCAGCCAAGGTTGGACCTTCCCTCACGTAA
AA sequence Show only first row Show all	>Lus10005918 pacid=23140125 polypeptide=Lus10005918 locus=Lus10005918.g ID=Lus10005918.BGIv1.0 annot-version=v1.0 MPFCEVSKYQHQDPPDSPSSHDNINGGLKISYRTYGRGPTKVLLIIGLAGTHDSWGPQIKGLTGTVFPNNEIHPVDLADDDDGISADGFEVCAFDNRGMG QSSIPVERSQYTTAIMAKDAIALMDHLGWKKAHVFGHSMGAMISCKLAAMVPDRVLSLALLNVTGGGFECFPKLDRRTMSVALRFMKAKTPEQRAAVDLD THYTKEYLDELVGSSTRRQILYQDYVKGISSTGMQCKYGFDGQINACWTHKVTRSDIESIRSGAFLVSVIHGRYDIIAQIYYARRLAEKLQPASRMVDLH GGHLVSHERTAEVNQALKDLIKASDAGTSPHDWTNIVQESSSSGWLLGRITSTEGKSKEGCVDPGSSSGVFTRLYPCFVYLLSLFVLAFEFMSKAHRRIR PAKVGPSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	0	1
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	1.4	0.8594
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	2.0	0.8645
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	2.8	0.8118
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	3.5	0.8158
AT2G02148			unknown protein		Lus10031926 [exp]	3.9	0.7634
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10028038 [exp]	10.1	0.7200
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	11.0	0.8074
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	13.0	0.7970
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	13.1	0.7556
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	14.1	0.7203

Compare expression of checked genes

Lus10005918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.