Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24310 370 / 2e-128 ABIL3 ABL interactor-like protein 3 (.1.2) AT3G49290 369 / 5e-128 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G42030 156 / 1e-45 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 132 / 4e-36 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022393 [exp] 464 / 4e-166 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10032421 [exp] 140 / 4e-39 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10008737 [exp] 137 / 4e-38 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10002151 [exp] 135 / 6e-37 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10023052 [exp] 107 / 7e-28 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10043223 [exp] 88 / 9e-19 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 84 / 1e-17 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10023654 [exp] 67 / 3e-12 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10034928 [exp] 64 / 5e-12 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016900 [exp] 431 / 3e-152 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.003G142800 [exp] 246 / 1e-79 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 236 / 6e-76 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.014G092300 [exp] 136 / 1e-37 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.002G165900 [exp] 134 / 2e-36 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.018G082600 [exp] 76 / 7e-16 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005919 pacid=23140112 polypeptide=Lus10005919 locus=Lus10005919.g ID=Lus10005919.BGIv1.0 annot-version=v1.0 ATGATAGCATCTTCCATTTCTAGAGAAGCATCAAACTATGATGAGATTTCCATGCAACAGAGTTTGCTCTTCTCAGATAGTCTCAAGGATTTGAAGAACT TGCGAACACAACTGTATACAGCTGCTGAGTACTTTGAGCTGTCCTACACGAATGATGACCAGAAGCAACTAGTGGTGGAAACGTTAAAGGATTATGCAAT CAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTAACATATAAAGTTAATGATATCTTGGATGAGAAAGTAGATGAAGTTACTGGAACCGAGTTT CGGGTGTCTTGTCTTGAACAGAGATTAAGGACTTGCCAAGAGTATATTGATCACGAAGGCCTCTCTCAACAGTCACTGGTGATAAATACACCGAAGTACC ACAAGCGGTACATTCTGCCAGGCAATGATGCTAATTTATTTCTTATCCTGCACGATGCTCTTTCATTATCAAGTCGAGCATTCATATATGGGGAGACAAT GCAAGGTTCCATCCGCCCTAAATCAAAATACCTAGGATGCAGCTTCGATGATGAAGACGATTGGCGTCAGTTTAGCAATTCTGTTAGAGCAACCATTAGC AAAACACCACCGGCTTCGGTTAGCAAAACACCACCAGCTTCAGTTAGCAAAACACCACCAGCTTCAGTAAGCAAAGGGGTTTCACCAACACCTTCTCCGC GAATTCCTCAACGATCTTCAACATTTTCGTTTACCAGCACAATGAAAGAACTAGTTGAACCAGATAAACGAACTGTTTCACCACACCGGTTTCCTCTTCT ACATTCTGGCTCCGTATCGAGACCAACAACCCCCGCAGGAAGAAAACGGTACCCATCAGAGCCACGGAAATCAATGTCAATGCGTATCCCTGCAGAGAAG AACTCCAAAGACATTGAGCATCACCCAAGCAAAAGCAAACGGATTCTCAAGGCCTTGCTTAGTCATCGCAAATCGAAGAAGGATGAGATGCTTTATACTT ATTTGGACGAGTATTGA
AA sequence Show only first row Show all	>Lus10005919 pacid=23140112 polypeptide=Lus10005919 locus=Lus10005919.g ID=Lus10005919.BGIv1.0 annot-version=v1.0 MIASSISREASNYDEISMQQSLLFSDSLKDLKNLRTQLYTAAEYFELSYTNDDQKQLVVETLKDYAIKALVNTVDHLGSVTYKVNDILDEKVDEVTGTEF RVSCLEQRLRTCQEYIDHEGLSQQSLVINTPKYHKRYILPGNDANLFLILHDALSLSSRAFIYGETMQGSIRPKSKYLGCSFDDEDDWRQFSNSVRATIS KTPPASVSKTPPASVSKTPPASVSKGVSPTPSPRIPQRSSTFSFTSTMKELVEPDKRTVSPHRFPLLHSGSVSRPTTPAGRKRYPSEPRKSMSMRIPAEK NSKDIEHHPSKSKRILKALLSHRKSKKDEMLYTYLDEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	1.4	0.9462
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	3.3	0.9179
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	3.5	0.9321
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	3.7	0.9443
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	3.9	0.9396
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	4.0	0.9291
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10022393 [exp]	7.8	0.8884
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	9.2	0.9310
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	10.1	0.8740
					Lus10034398 [exp]	10.7	0.9317

Compare expression of checked genes

Lus10005919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.