Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53040 112 / 2e-29 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT5G66990 103 / 5e-26 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT1G74480 98 / 1e-23 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT1G18790 97 / 1e-23 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT4G35590 74 / 1e-14 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT4G24020 52 / 3e-07 NLP7 NIN like protein 7 (.1) AT3G59580 51 / 4e-07 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G17150 49 / 2e-06 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G64530 49 / 3e-06 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35270 47 / 1e-05 NLP2 Plant regulator RWP-RK family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035008 [exp] 100 / 3e-24 AT1G18790 145 / 6e-42 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10034456 [exp] 98 / 3e-23 AT1G18790 157 / 9e-46 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10019100 [exp] 93 / 8e-22 AT1G18790 149 / 2e-43 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10004035 [exp] 58 / 3e-09 AT5G16100 68 / 2e-12 unknown protein Lus10023931 [exp] 49 / 2e-06 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10014429 [exp] 49 / 3e-06 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 49 / 3e-06 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 49 / 5e-06 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 47 / 1e-05 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016800 [exp] 139 / 1e-39 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.015G011800 [exp] 136 / 1e-38 AT5G53040 137 / 1e-39 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.005G101000 [exp] 82 / 6e-18 AT4G35590 273 / 5e-90 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) Potri.006G223100 [exp] 59 / 7e-10 AT5G16100 72 / 7e-14 unknown protein Potri.007G133400 [exp] 58 / 3e-09 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 53 / 2e-07 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G087500 [exp] 52 / 2e-07 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.001G293300 [exp] 51 / 6e-07 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 51 / 6e-07 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 49 / 3e-06 AT4G24020 994 / 0.0 NIN like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Lus10005921 pacid=23140128 polypeptide=Lus10005921 locus=Lus10005921.g ID=Lus10005921.BGIv1.0 annot-version=v1.0 ATGAAGTCGTGTAGTATTGCTTCTAGTGGACTGCTGGCTGCATCAATGCCATCATCATCATCATCTATTGTTCACTCGCAAGAACAAGTTATGAACAATA TTGGTACTAACATGATTACTAATCATCAGCATCAAGCTGTAATGCAGGATTATGACCAGCCCCTGGATCTGGATTGGTCCTTTGTGGAGGACTACTTTCA ACTCGACCATTGTGTTTCAGTGGAGCCTAATAATCATCCTGAAGTGATTAAGTACTATTCATCAAACAATAGTTGTTGCAGCTATGGCTTGGAGGGTACT ACTGTAAATGAATGGGATGATCAAATGATGATGATGATGATCAACAGTACTGGTGGAGTTGTTACTCCTACTGATCTTCTTCCTCCTTATCCTCCTAGCT ATACATACGTTCCAACGACCACCGATGTTAGTAAGATGATTACGATGGGAAAGAATGATGATGTTGACGAGCGAAGTAAGGTCGTGTGTAGTAATAACAG TAGTACTAGAGGGAGGAAGAGATGGGTCGGGCATAAGAATAATGAGCGGCAATTGGAATTGGAAGATATTCAAAAGTATTTCCACGTTCCGATTACTAGA GCTGCCAAGGAAATGAAAGTTGGGTTGACTGTGCTGAAGAGAAGGTGCAGGGAATTGAATATCATGAGATGGCCTCACAGGAAGATGAAGAGCCTCAACT CCCTCATCCTTAATGTCAAGGAGATGGGGATGATGGAGGAAGAGTTATTGTTGCTGGAAGAACACAGGAAGCTTCTGGAGAAGATGCCTGACATGGAACT GACAGAAAGGACAAAGAAGTTGAGGCAAGCTTGCTTCAAAGCTAATTACAAGAAGCGGGTCCTCTTTCATCTCTCTAAATAA
AA sequence Show only first row Show all	>Lus10005921 pacid=23140128 polypeptide=Lus10005921 locus=Lus10005921.g ID=Lus10005921.BGIv1.0 annot-version=v1.0 MKSCSIASSGLLAASMPSSSSSIVHSQEQVMNNIGTNMITNHQHQAVMQDYDQPLDLDWSFVEDYFQLDHCVSVEPNNHPEVIKYYSSNNSCCSYGLEGT TVNEWDDQMMMMMINSTGGVVTPTDLLPPYPPSYTYVPTTTDVSKMITMGKNDDVDERSKVVCSNNSSTRGRKRWVGHKNNERQLELEDIQKYFHVPITR AAKEMKVGLTVLKRRCRELNIMRWPHRKMKSLNSLILNVKEMGMMEEELLLLEEHRKLLEKMPDMELTERTKKLRQACFKANYKKRVLFHLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	0	1
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	2.2	0.8415
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	5.0	0.7985
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	7.7	0.8241
					Lus10016424 [exp]	8.4	0.8402
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	8.5	0.7884
					Lus10030647 [exp]	11.1	0.7495
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	11.1	0.8205
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	11.5	0.7676
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	16.6	0.7437
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	18.9	0.7810

Compare expression of checked genes

Lus10005921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.