Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30280 101 / 5e-24 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036149 [exp] 419 / 2e-146 AT1G30280 182 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081500 [exp] 159 / 1e-44 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005923 pacid=23140126 polypeptide=Lus10005923 locus=Lus10005923.g ID=Lus10005923.BGIv1.0 annot-version=v1.0 ATGGGAACCCAACAAACTAATACTACTAATACTATCCTCCACCGCCGTTCCACGGAGGACTCCTTGTCAACCGCCGCACCCTCTGCCTTATCCGTATTCA ATAGACGCTCCGTCGACCACAACAATCTCCACCCCAACAACTTCTCTGACGTCTTCGGCGGGCCGCCCTGTACTGTCCTGGAAAGAAAATTCTCCGGAGA CGACTTCACGAGGCCTTGTTCGAGTTCATTCTACGAGGTGGTATTCTGGCCACCACCAGGGTTTGTGTCTCCTCCTAAGAAGGGCAGGGGCGGGAATTTG CCGTCGTTCCGTATCCCTGCAAAAGGAGAGGGTTTCTACAGTGATGTATTTGGTTCAGCGAAATCGAGAGACAGATCCAGGCCCAACTCCAAAGGGAAAT CATCCAAATCCAACTCTTCTAATTCGGTGCTTAGCTCTGAAGAGCTTATGATGATGAGCCCTACCCATCATGACCCCGCCTCTGCACCCACATTGTCTTC TTTTGTTTCTTCCAATTCAAAACTCAGGCCAATTAACGTGCCAAGCCGATGGAACTCCAACACAATGAAGCCAGCGGGAGATCCATACAATTACAACTGG TCTTCTTCTTCAGAAAACTATTTCAAAGTTGCTCAGCAAGTTTCTTCCCCTGAAACAACGACTGTGGAGCCTAATTCTAATTGGAGTACCAACGGCTCTG GTGATGACGAAGAAGACGACGACGATGACGTTGAGTTGGAAGTCAACAATCATGATAATAGGCCGGCTGGTTTGGATCATATGATGCAAGACCACTATGA TGATGTCACGGCTTCTTATGTAATCGAGATCAATTCTGAGTACAAGAATAGAGACGGGAATGGGGAAGCAGTGTCTATTGATGAAGCCATTGCTTGGGCT AAGGAGAAGTTTCAGGCTTACAATGACAAACAACAACACTCCACCAGCAAACTACAAGGTGCTTTTTAA
AA sequence Show only first row Show all	>Lus10005923 pacid=23140126 polypeptide=Lus10005923 locus=Lus10005923.g ID=Lus10005923.BGIv1.0 annot-version=v1.0 MGTQQTNTTNTILHRRSTEDSLSTAAPSALSVFNRRSVDHNNLHPNNFSDVFGGPPCTVLERKFSGDDFTRPCSSSFYEVVFWPPPGFVSPPKKGRGGNL PSFRIPAKGEGFYSDVFGSAKSRDRSRPNSKGKSSKSNSSNSVLSSEELMMMSPTHHDPASAPTLSSFVSSNSKLRPINVPSRWNSNTMKPAGDPYNYNW SSSSENYFKVAQQVSSPETTTVEPNSNWSTNGSGDDEEDDDDDVELEVNNHDNRPAGLDHMMQDHYDDVTASYVIEINSEYKNRDGNGEAVSIDEAIAWA KEKFQAYNDKQQHSTSKLQGAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	1.7	0.9371
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	2.0	0.9350
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	2.8	0.8852
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	3.2	0.9092
AT3G01960			unknown protein		Lus10012546 [exp]	3.9	0.8674
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	4.6	0.9188
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	5.7	0.8781
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	6.0	0.8837
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	6.3	0.9180
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	6.9	0.8673

Compare expression of checked genes

Lus10005923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.