Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16880 525 / 0 Target of Myb protein 1 (.1.2.3) AT1G06210 231 / 2e-72 ENTH/VHS/GAT family protein (.1.2) AT4G32760 149 / 2e-39 ENTH/VHS/GAT family protein (.1.2) AT1G21380 146 / 4e-39 Target of Myb protein 1 (.1) AT1G76970 143 / 3e-38 Target of Myb protein 1 (.1) AT3G08790 139 / 3e-36 ENTH/VHS/GAT family protein (.1) AT5G01760 120 / 1e-29 ENTH/VHS/GAT family protein (.1) AT2G38410 109 / 9e-26 ENTH/VHS/GAT family protein (.1) AT5G63640 87 / 1e-18 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040912 [exp] 772 / 0 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10013788 [exp] 579 / 0 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10039144 [exp] 566 / 0 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10024896 [exp] 247 / 5e-79 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10022922 [exp] 231 / 2e-72 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10022140 [exp] 154 / 6e-41 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 142 / 4e-37 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 141 / 1e-36 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10018948 [exp] 135 / 1e-35 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082500 [exp] 600 / 0 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.019G050000 [exp] 597 / 0 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.005G225000 [exp] 243 / 1e-76 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.002G038000 [exp] 237 / 3e-74 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.002G075500 [exp] 149 / 7e-40 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 150 / 9e-40 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 143 / 6e-38 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 144 / 1e-37 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 140 / 3e-36 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 139 / 6e-36 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10005924 pacid=23146042 polypeptide=Lus10005924 locus=Lus10005924.g ID=Lus10005924.BGIv1.0 annot-version=v1.0 ATGAGTGACAATCTGTTGGAGAAAGTGAGTGCGTTTGGCGAACGCCTCAAGATCGAAGGTGCTGAGATGGGCCGAAAGATGACGGATGGGATGAGTTCTA TGAGCGTCAAGATGAGAGAGCTCTTTCAAGGTCCCAACCAGGCTGACAAGATTGTGGAGGAAGCTACTGCAGAGACGCTTGAAGAGCCTGATTGGGCTAT GAATCTGGAAATATGTGACATGATCAATCATGAGAAGATCAACAGCGTTGACTTGGTCCGCGGGATTAAGAAGAGAATTTTGATGAAGAGTGCCAGGGTT CAGTACTTGGCTTTGGTGTTGCTTGAAACGATCGTCAAGAATTGTGAGAAGGCCTTCTCTGAAGTCGCTGCTGAAAGGGTTCTTGACGAGATGGTGAGGC TAATTGATGATCCTCAGACTGTTGTTAACAACCGCAGTAAGGCCCTTATTCTGATCGAAGCCTGGGGCGAATCGACCAGCGAGCTGCGCTATTTGCCTGT TTATGAAGAAACTTACAAGAGTTTAAAGTCAAGGGGCATTCGGTTCCCTGGTCGTGACACGGAGAGTTTGGTGCCTATCTTTACCCCTCCTCGTTCCATT TCAGCACTGGAAGAGGAAGTCGATATTGCAGAGCAGACTCATCATGAGGTTCCCATACAAAGCTTTACTGCTGAGCAAATGAAAGAAGCTTTTGATGTGG CAAGGAATAGCATTGAACTTCTCATCACAGTTTTATCTTCCTCACCTGGGCAAGATGCTTTAAAGGACGATTTGACAACAACGCTTGTCCAGCAGTGCCG CCGGTCTCAGACCACTGTCCAAAGAATCATCGAGACAGAAGGCGATAACGAGGCCTTACTATTTGAAGCTCTGAATGTTAACGACGAGATTCAGAAGGCT CTGTCGAAGTATGAAGATATGAAGAGGCCAACAGCGGTGGCTCGTGAACCAGAGCCTGCAATGATTCCAGTAGCTGTGGAGGCTGAGGAGTTACCAGTCC CGGGGAAGGAGGACGATGCATTGATAAGAAAGCCAGCAGGAAGCTCAAGGAATGGAGTACATGGCGGGAGCAATGACGATATGATGGACGATCTTGACGA GATGATCTTCGGGAAGAAAGGTGGGGCCGCACCGGAGGTAGGGAACGATTCAAACAAGAAGCAATCGTCGTCGTCGTCATCCAAGGACGATCTCATATCT TTCTGA
AA sequence Show only first row Show all	>Lus10005924 pacid=23146042 polypeptide=Lus10005924 locus=Lus10005924.g ID=Lus10005924.BGIv1.0 annot-version=v1.0 MSDNLLEKVSAFGERLKIEGAEMGRKMTDGMSSMSVKMRELFQGPNQADKIVEEATAETLEEPDWAMNLEICDMINHEKINSVDLVRGIKKRILMKSARV QYLALVLLETIVKNCEKAFSEVAAERVLDEMVRLIDDPQTVVNNRSKALILIEAWGESTSELRYLPVYEETYKSLKSRGIRFPGRDTESLVPIFTPPRSI SALEEEVDIAEQTHHEVPIQSFTAEQMKEAFDVARNSIELLITVLSSSPGQDALKDDLTTTLVQQCRRSQTTVQRIIETEGDNEALLFEALNVNDEIQKA LSKYEDMKRPTAVAREPEPAMIPVAVEAEELPVPGKEDDALIRKPAGSSRNGVHGGSNDDMMDDLDEMIFGKKGGAAPEVGNDSNKKQSSSSSSKDDLIS F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	0	1
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	1.7	0.9206
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	2.0	0.9102
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	2.4	0.9051
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	3.5	0.9106
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	3.5	0.9112
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	6.7	0.9066
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	6.9	0.8913
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	7.9	0.9041
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	9.5	0.9007
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	9.9	0.8990

Compare expression of checked genes

Lus10005924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.