Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02990 90 / 1e-22 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 81 / 1e-19 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G17750 80 / 3e-19 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT4G18880 77 / 5e-18 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT3G22830 76 / 1e-17 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT1G46264 76 / 1e-17 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT1G32330 75 / 3e-17 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G36990 74 / 4e-17 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT4G13980 74 / 5e-17 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT4G11660 74 / 6e-17 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040911 [exp] 112 / 8e-31 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10000312 [exp] 84 / 3e-20 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 84 / 3e-20 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10029269 [exp] 81 / 4e-20 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10006618 [exp] 82 / 1e-19 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10007318 [exp] 81 / 1e-19 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10030956 [exp] 81 / 2e-19 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10039376 [exp] 79 / 9e-19 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10015237 [exp] 78 / 2e-18 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138900 [exp] 84 / 2e-20 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 83 / 3e-20 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 79 / 1e-18 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.017G059600 [exp] 78 / 2e-18 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.008G157600 [exp] 77 / 3e-18 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.004G062300 [exp] 77 / 4e-18 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.011G071700 [exp] 77 / 4e-18 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.001G320900 [exp] 77 / 4e-18 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.006G226800 [exp] 75 / 2e-17 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.014G027100 [exp] 74 / 5e-17 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10005925 pacid=23146051 polypeptide=Lus10005925 locus=Lus10005925.g ID=Lus10005925.BGIv1.0 annot-version=v1.0 ATGGTTGATGTGGCTGTCGGCAGCATCGTGCCGTCATTTCTATGCAAAACCTACGAACTGGTGGAAGACCCGTCCCCAGATTCCGTCGTCTCCTGGAGCA GCGGCGACAACAATTTCGTGGTGTGGAACGTCCCTGAGTTTCAGAAACAGCTTTTGCCCAAGTTCTTTAAGCACAACAATTTCTCCAGCTTCGTCAGGCA ATTGAACACTTATGTATGTCGTCGCTCATCTCTATTGATTCCCTTAGGGTTTTGGTGA
AA sequence Show only first row Show all	>Lus10005925 pacid=23146051 polypeptide=Lus10005925 locus=Lus10005925.g ID=Lus10005925.BGIv1.0 annot-version=v1.0 MVDVAVGSIVPSFLCKTYELVEDPSPDSVVSWSSGDNNFVVWNVPEFQKQLLPKFFKHNNFSSFVRQLNTYVCRRSSLLIPLGFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02990	HSF	ATHSFA1E	heat shock transcription facto...		Lus10005925 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	4.5	0.8992
					Lus10041745 [exp]	4.7	0.9089
AT3G25160			ER lumen protein retaining rec...		Lus10038198 [exp]	12.0	0.8479
AT5G12340			unknown protein		Lus10009698 [exp]	18.7	0.8597
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	23.0	0.8694
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	26.2	0.8725
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	29.3	0.8880
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	29.9	0.8648
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	41.2	0.8524
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	43.8	0.8648

Compare expression of checked genes

Lus10005925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.