Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03110 509 / 6e-179 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT1G03457 489 / 2e-171 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G16280 151 / 6e-40 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 95 / 1e-20 flowering time control protein-related / FCA gamma-related (.1) AT5G47620 68 / 6e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 66 / 2e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 66 / 2e-11 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G26650 62 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 60 / 2e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G23350 60 / 3e-09 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040910 [exp] 506 / 8e-179 AT4G03110 326 / 5e-109 RNA-binding protein-defense related 1 (.1.2) Lus10029574 [exp] 156 / 5e-41 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 134 / 1e-33 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 129 / 7e-32 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 99 / 2e-22 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10002063 [exp] 64 / 7e-11 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038806 [exp] 64 / 2e-10 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 63 / 2e-10 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10010370 [exp] 62 / 5e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135540 [exp] 637 / 0 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 577 / 0 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.010G147900 [exp] 151 / 4e-39 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 124 / 1e-30 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.002G062700 [exp] 67 / 1e-11 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.002G222400 [exp] 62 / 4e-10 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 61 / 7e-10 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G319900 [exp] 57 / 8e-10 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.017G059000 [exp] 57 / 1e-09 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.006G015700 [exp] 59 / 3e-09 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005926 pacid=23146035 polypeptide=Lus10005926 locus=Lus10005926.g ID=Lus10005926.BGIv1.0 annot-version=v1.0 ATGGCGGAGGATAAAAAGGAAGGCAGAGCAGGAGGGAGCGAGGAGAGTGTGAAGTTATTTGTAGGGCAAGTCCCCAAGCACATGACGGAAGCTCAGCTTC TGGCAATGTTCAAGGAGTTTGCCTTGGTAGACGAGGTCAACATCATCAAAGACAAGACTACGCGCGCTTCCCGAGGTTTCTCCATTTTCTCCTCTTTGCT ACCTGCTACATACATTTTCAGAAAACCCCCCCAAATCGATTCGAGATTCGCGGTTTTCAGAGCCCTAATTTCTTCTTCTTCTAAGTTTTATCTGCTCTTC TCTGCAGGGTGTTGTTTCATCATTTGTCCGTCCAGGGAAGAAGCTGACAAGGCGGTCAATGAGTGTCATAACAAGAAAACCTTGCCTGGGGCATCTAGTC CATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAACGTTTAGAACACAAACTCTTTGTTGGCATGCTACCGAAAAATGTTTCCGAGGCTGAATTGTCTGA ATTGTTCTCCATGTATGGCACGATAAAAGATTTACAAATATTGAGAGGTTCTCAACAAACAAGTAAAGGTTGCGCTTTTTTGAAGTATGATACAAAAGAC CAAGCTCTTGCTGCCCTGGAGGCCATCAATGGGAAACATAAAATGGAGGGTTCAAATGTCCCTCTGGTCGTCAAATGGGCAGATACAGAAAAGGAAAGGC AGGCAAGGAGGGCACTGAAAGCACAATCTCAGGCATCGAATATGCCAAATTCTGAATTACAGCATCCTTCCTCATTTGGAGTCTTGCCAATGGGATATGC CCCTCCTTACAATGGCTATGGTTACCAGGCTCCTGGAACATATGGAATCATGCCTTACCGAATACCATCAATGCAGAATCAACCTGCCTTTCATGGCATG ATTCCTCCGGCAAATCAAGGAACTGCATTGCGAGGTGGAATCAGGCCAGACATTTCTCCCAACATGGGACCCAGAAATTATGGAGTTCCTCCGGCAAGTT ATGTGGGCTCGGCTTACCCTGCAGCCCCAGGTCTTCAGTACTCTATGCCTTATCCCGCAGGAATGATGGGTCATCGACCTTTAAGTGGCTCGCCTAGTTC AATGTCCCAGCAAGTTGGTAGCATGAGTAGTCCCGGATCCTCCTCGGGTGTCACTACAAGTTCGGGGTCACAGGTTGAGGGTCCACCTGGTGCGAATTTG TTCATATACCACATACCACAAGAATTTGGAGACCAGGAGCTTGCAAATGCTTTCCAACCATTTGGCAAGGTGTTGAGTTCAAAGGTGTTTGTAGACAAAG CTACTGGTGTTAGCAAATGTTTTGGTTTCGTTAGCTATGAGTCGCCAGCTGCAGCGCAAGCTGCGATTGGGGTGATGAATGGATGCCAGTTAGGGGGTAA GAAATTGAAGGTTCAACTGAAAAGAGACAACAACAAACAGAGTAAACCTTACTAA
AA sequence Show only first row Show all	>Lus10005926 pacid=23146035 polypeptide=Lus10005926 locus=Lus10005926.g ID=Lus10005926.BGIv1.0 annot-version=v1.0 MAEDKKEGRAGGSEESVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGFSIFSSLLPATYIFRKPPQIDSRFAVFRALISSSSKFYLLF SAGCCFIICPSREEADKAVNECHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSEAELSELFSMYGTIKDLQILRGSQQTSKGCAFLKYDTKD QALAALEAINGKHKMEGSNVPLVVKWADTEKERQARRALKAQSQASNMPNSELQHPSSFGVLPMGYAPPYNGYGYQAPGTYGIMPYRIPSMQNQPAFHGM IPPANQGTALRGGIRPDISPNMGPRNYGVPPASYVGSAYPAAPGLQYSMPYPAGMMGHRPLSGSPSSMSQQVGSMSSPGSSSGVTTSSGSQVEGPPGANL FIYHIPQEFGDQELANAFQPFGKVLSSKVFVDKATGVSKCFGFVSYESPAAAQAAIGVMNGCQLGGKKLKVQLKRDNNKQSKPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10005926 [exp]	0	1
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	1.0	0.9022
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	2.0	0.8383
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	2.4	0.8022
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	8.1	0.8344
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	9.8	0.7742
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	12.4	0.8169
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	21.5	0.7639
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	22.5	0.7758
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	25.1	0.7742
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	26.1	0.7959

Compare expression of checked genes

Lus10005926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.