Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 170 / 5e-48 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040908 [exp] 347 / 1e-117 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10004130 [exp] 208 / 1e-62 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10001725 [exp] 196 / 6e-58 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10033981 [exp] 171 / 8e-49 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10012797 [exp] 166 / 5e-47 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135500 [exp] 254 / 1e-80 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 204 / 2e-61 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.005G043400 [exp] 203 / 5e-61 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.010G019000 [exp] 173 / 1e-49 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 150 / 2e-41 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.017G103401 [exp] 52 / 6e-09 AT3G06350 59 / 2e-12 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 53 / 6e-08 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01487 [flax] [poplar] DHquinase_I Type I 3-dehydroquinase CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10005928 pacid=23146052 polypeptide=Lus10005928 locus=Lus10005928.g ID=Lus10005928.BGIv1.0 annot-version=v1.0 ATGGCATTCTGGACTAATCTTCTGGTGTGCACGCCTCTGGAACGTGAAACCACAGGAGGAATGTTGTGCGCCATGGAGAAAGCCAAGGCAGAAGGCGCAG ACGTTGTGGAGCTTTCCATGGGTTCCTTGTCATTCTCCCACATTTCTCAAGTTGAGACGCTCCTTGCACAAAGAACCCTGCCTACTATCGTCTCTTACAG CAGGCTGAAAAAATCGTCAAGCGCCGAGGAAAGGAGGCAAAGTCTCAGCACTTGTTTGGAAGTGTTGAGACTGGCTCTAGAATTAGATGTGGAGTTTCTA GAAATTGATTACGAGATGGCTTCTGATGCCAGCATGGTAGAGGAGGTACTAGAGAGCCGCAGAAGAGCCAAAGACGGGAAGCTGGTTGGTTACAACACAG ACTGCGAGGCGTCAATCTCAGCGATAGAAGATGCACTCAGAATCAGAGAAAAAGGAAGGGTATTCCGAAACAGAGGTTACTTGGAGAATAATAGCAGTAG TAGTTGTGGTGGTCCTCTAGCTGGGAAGACTTTTGTGGTAGTGGGTGCAGGGGGAGCTGGGATAGCACTCGCATTCGGTGCCAAAAGTAGAGGTTGTAAA AGGGTTGTCATCTTCAACCGCAATTTTGAGAGAGCCAAGGCTCTGGCTGCTGCAGTTTCAGGAGAAGCACTCCCTTTCGAAAACCTCGACACGTTCCAGC CGGAGAAAGGCATGATTCTTGCAAATGCTTCTGCCATCGGAATGCAGCCAAACACAGACACCACACCTGTTTCCAAGGTGGCATTAAAGGTGTACGATCT GGTTTTCGACGCTGTTTACACCCCGAGAAACACGAGACTGTTGCAGGAGGCTGGAGAAGCAGGGGCCACCGTGGTAAGTGGAGTTGAGATGTTCATCAGA CAGGCTCTTGGCCAGTTCACCCTCTTCACTGGCGGCTTAGCCCCGGAGGCTTTCATGCGTAAGCTTGTTCTGGAGCAATTCTGA
AA sequence Show only first row Show all	>Lus10005928 pacid=23146052 polypeptide=Lus10005928 locus=Lus10005928.g ID=Lus10005928.BGIv1.0 annot-version=v1.0 MAFWTNLLVCTPLERETTGGMLCAMEKAKAEGADVVELSMGSLSFSHISQVETLLAQRTLPTIVSYSRLKKSSSAEERRQSLSTCLEVLRLALELDVEFL EIDYEMASDASMVEEVLESRRRAKDGKLVGYNTDCEASISAIEDALRIREKGRVFRNRGYLENNSSSSCGGPLAGKTFVVVGAGGAGIALAFGAKSRGCK RVVIFNRNFERAKALAAAVSGEALPFENLDTFQPEKGMILANASAIGMQPNTDTTPVSKVALKVYDLVFDAVYTPRNTRLLQEAGEAGATVVSGVEMFIR QALGQFTLFTGGLAPEAFMRKLVLEQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	0	1
AT1G36320			unknown protein		Lus10033109 [exp]	2.0	0.8760
AT5G16030			unknown protein		Lus10033537 [exp]	2.2	0.9011
AT3G01270			Pectate lyase family protein (...		Lus10036721 [exp]	3.7	0.8151
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	4.2	0.8239
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	6.2	0.8190
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10028925 [exp]	6.6	0.8333
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	10.2	0.8348
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10016199 [exp]	13.6	0.8050
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	14.5	0.8142
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	15.5	0.8044

Compare expression of checked genes

Lus10005928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.