Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03150 165 / 3e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040907 [exp] 173 / 3e-55 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135400 [exp] 173 / 5e-55 AT4G03150 169 / 1e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005929 pacid=23146040 polypeptide=Lus10005929 locus=Lus10005929.g ID=Lus10005929.BGIv1.0 annot-version=v1.0 ATGATGAACATGATCTTCTCTGCTCCGTGTCCAAAATGCGATCCAACCGCAGCAACCTTCCCTTTCGTTGTCATCTCTCGGTCCTCCACACTCCAAATCT CGCTTAACCCACCAGCAGCAGCTAACCCAATCCGCCCTTTCAAGACTCGGCACGCTCCTCCCTCCACTGTTTCCAGATGCCATCTGAACGACGATGACGA CGCTCAAGTGCAAGACCTCAAGGTCCCTCAGAAATGGCTGCATCCTTCCAAAGCACTGGAGGAATCGGAATGGCTCAGAGTTTCGCTGCACAAATGGCTG GATGATGAGTACTGCCCGGAGGATACAAATGTGGAAATCAGCAGAGTCGCTGCCCGATCGTATTATGAGTCTCTGCTTGATGAACGGACCGAGCTGGGCG AGATTCTGTTGAAGATGGCTTGCGAATTGGAAGCTATTTCCTATCAAGACAGTTTCCACGGGGCCTTCTCATCAGCTAATGCGGCAGTGAACTTGATTTC CCAACGGATACATCATCAGGGTAATGTTATGTTGTCAACTTTCCTCAATCAATGA
AA sequence Show only first row Show all	>Lus10005929 pacid=23146040 polypeptide=Lus10005929 locus=Lus10005929.g ID=Lus10005929.BGIv1.0 annot-version=v1.0 MMNMIFSAPCPKCDPTAATFPFVVISRSSTLQISLNPPAAANPIRPFKTRHAPPSTVSRCHLNDDDDAQVQDLKVPQKWLHPSKALEESEWLRVSLHKWL DDEYCPEDTNVEISRVAARSYYESLLDERTELGEILLKMACELEAISYQDSFHGAFSSANAAVNLISQRIHHQGNVMLSTFLNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03150			unknown protein		Lus10005929 [exp]	0	1
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10021367 [exp]	9.0	0.8791
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	9.1	0.9103
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	10.3	0.9099
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	15.2	0.9074
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	20.2	0.9030
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	22.2	0.8964
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	24.3	0.9015
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	25.1	0.8936
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	29.5	0.8953
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	29.7	0.8951

Compare expression of checked genes

Lus10005929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.