Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 351 / 2e-108 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 338 / 9e-106 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 300 / 7e-92 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 296 / 3e-90 ARF ARF18 auxin response factor 18 (.1) AT1G35540 294 / 1e-89 ARF ARF14 auxin response factor 14 (.1) AT1G34410 292 / 9e-89 ARF ARF21 auxin response factor 21 (.1) AT4G23980 292 / 1e-88 ARF ARF9 auxin response factor 9 (.1.2) AT1G34310 283 / 9e-86 ARF ARF12 auxin response factor 12 (.1) AT1G35520 283 / 2e-85 ARF ARF15 auxin response factor 15 (.1) AT1G35240 281 / 4e-85 ARF ARF20 auxin response factor 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040906 [exp] 1282 / 0 AT5G62000 367 / 2e-114 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 352 / 8e-109 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 350 / 7e-108 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 340 / 4e-106 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 337 / 1e-104 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 322 / 1e-99 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10033598 [exp] 288 / 3e-85 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 285 / 8e-84 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10005264 [exp] 281 / 9e-84 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135300 [exp] 406 / 6e-131 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.002G207050 [exp] 399 / 7e-128 AT5G62000 454 / 4e-148 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 361 / 2e-112 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 361 / 3e-112 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 344 / 2e-106 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G228800 [exp] 338 / 9e-106 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 338 / 2e-105 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.001G066200 [exp] 335 / 4e-103 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.014G100100 [exp] 319 / 4e-98 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 316 / 7e-97 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10005930 pacid=23146063 polypeptide=Lus10005930 locus=Lus10005930.g ID=Lus10005930.BGIv1.0 annot-version=v1.0 ATGATTCTGGGTCGGACAAAACGTATGATCATGGGATCTCTTGATCAAGTCCAAGCCCCACTAATTAATTCCATTCACGCCGCCGGTGGCCATCATCGCC ATACCGCCGCTGCTCATTTGACAAGAAAGCGCTGCATTCAGCGACGGTCTCCTCCTACACAAATCAACAATCTCCCACCACAAAGTAGTAGTCAACCTGG GGATCAGGATGGACTGTTGGACGAATTATGGCAAGCGTGTGCTGGTCCGCTGGTGTACGTGCCAAAAGTCGGAGACTATGTGTATTATTTCCTTCAGGGT CACATTCAACAGGTCAAGTCTTGTATCGAACAAGACTGTGACATGGACTTGCCTCACGGGAACTCTGTTCCATCTAAGCTCCTCTGCAGAGTTGTCGATG TCCAACGAAAAGCCGAAGCAGTCACCGACGAAGTGTTTGCGCGCATCGTTCTGCTTCCCGTACTCGAGCCGCCGGATGAGGAGGTGATAAGCGGCAGCTG GAAGGAAGAGGAGGAAGATGACGAGGACGGGAGTAGTAACAGTAATCAATCATGGAATCAGATGATCAGATCAAAGAACAGCAAAAGATCCTTCTCGAAG AAGCTGACTCCATCGGACACAAGCAAACATGGGGGATTCTCTGTCCCCAGGCGCCAGGCTGAAGAATGCCTCCCCCCTCTGAACATGTCAGAAGAACCCC CTGTTCAGGAAATTGCAGCGAAGGACATCCACGACAACCTCTGGCGCTTCCGCCACATCTACAGAGGTGACCCAAAGCGTCACTTGCTCACTAGCGGATG GAGTACTTTCGCTACATCCAAGCAGATTTCCCCCGGCGATCAGTTCATCTTTGTCAGGGGTGAGAATGGAGAACTGAGAGTTGGGATACGAAGGGGAGGG CAGCAGAAGAAGCCGCCGCCATCCGCCACCGTCATATCGGCCAACTGCATACTCCACGGCATCCTCGCTGATGCTTCTCATGCTGTTACTACTGGATCCA CTTTCGTCGTCTATTATCGCCCATGGAGCAACTCGAGTGAGTTCCTTGTCCCGGCAGGACGGTATCTCAAGGCTGCGAAAATCGAGTATTCGCCCGGGAC GAGATTCAAAATGTTGTTTGAAGGTGACGAATGTACGGAGCAGAGGGTTGAAAGATTTGAAGGAAGAATTGTTGGCAATGAGCCAGTGGATCCCTTGCAT TGGCATGACTCTGAATGGGAAAGACTAAAAGTGAAGTGGGATGCCACATCTGACACATTAGAGAGGCCCGAACGAGTGTCATCGTGGAATATCGATCTCA TCGAGCCAGTGCAAATGAAGCTCCCCTCTCCTTTTGGCCGTCATCTCAAGAGAAATCGGGATTTTCTTTTTGACAAGACGACGTCTAGGCTTAACGCCAC AAATTCCTTCAACGACAATTTCATTACTGCAGCAGGAATGCTGCATAATCCATTTTTTCCGCAGAGTTTGAACTTGGAGGCCTTTCAAGAGCGAAACAAG AAAAGAAACGCCCAACAGCAGCTGCCTAACCCTAAATCCCCAATAACACCACCACATTGGTTGAAGCTCTACTCAGCCGCCTCAACAAATCCAAACCTAC CTCCCAACTTTCCCCTTATACCCAACCAACAGAGCCAGGGTCAGGGTCAGGGCGAGGCAGGTTGGACCAAGATGGACCACGATGGTTTGAGTCCTACGGC GCCACAGGCCAAGACCAACTGGCCGGTTGCATCGTCTGGAGACAAATATCTTTCGTCCTCCTCTTCTTCCTCTTATTCACAGGGAAGAAAAGAGGACGAT GGAAATGAAGCTCTGCTTGCTTCTCCGCCTCACCAATATGAGATGGATAAACGCAAGTGTATGGTATTTGGAGTGAATATTCTCTCTAATATTACCGAAA CGGAGTTCCCTTCACCACAAATAGTTACTGTTACTTCTGGCGATCTCAGCGAGAGCACCCCTGCCGTTGCAGATCAATGTCTCTCCAACTCTGACGTCGT CGTTGTCCCGTTAACCTCCCAGCATTCGACCGGAGGAGGTTCGGAGACGATATCTTATACCCCCACAGCCATCACCACCATCCCTCCCAACATTGCTAAT TGCAGCATCGTCATCAAGGTGTTGAAACACGGAAGTCAACTCGGAAGGCTGGTTGACCTGGCTCAGTTCAACGGGCATGACCAGCTGGTTCGTGAACTTG ACCGAATGTTTGGCTTCCGTGGTAGCTTGGTTGACGGGAGCAGTGGATGGCACGTTACTTACGTTGATGCAGCCGATAGTCAGCATCATCATGACAGTAC AAGTGAAATCATGTTCCCCATCGCTGACCGTCAGTGGCAGTTGAGTATATGA
AA sequence Show only first row Show all	>Lus10005930 pacid=23146063 polypeptide=Lus10005930 locus=Lus10005930.g ID=Lus10005930.BGIv1.0 annot-version=v1.0 MILGRTKRMIMGSLDQVQAPLINSIHAAGGHHRHTAAAHLTRKRCIQRRSPPTQINNLPPQSSSQPGDQDGLLDELWQACAGPLVYVPKVGDYVYYFLQG HIQQVKSCIEQDCDMDLPHGNSVPSKLLCRVVDVQRKAEAVTDEVFARIVLLPVLEPPDEEVISGSWKEEEEDDEDGSSNSNQSWNQMIRSKNSKRSFSK KLTPSDTSKHGGFSVPRRQAEECLPPLNMSEEPPVQEIAAKDIHDNLWRFRHIYRGDPKRHLLTSGWSTFATSKQISPGDQFIFVRGENGELRVGIRRGG QQKKPPPSATVISANCILHGILADASHAVTTGSTFVVYYRPWSNSSEFLVPAGRYLKAAKIEYSPGTRFKMLFEGDECTEQRVERFEGRIVGNEPVDPLH WHDSEWERLKVKWDATSDTLERPERVSSWNIDLIEPVQMKLPSPFGRHLKRNRDFLFDKTTSRLNATNSFNDNFITAAGMLHNPFFPQSLNLEAFQERNK KRNAQQQLPNPKSPITPPHWLKLYSAASTNPNLPPNFPLIPNQQSQGQGQGEAGWTKMDHDGLSPTAPQAKTNWPVASSGDKYLSSSSSSSYSQGRKEDD GNEALLASPPHQYEMDKRKCMVFGVNILSNITETEFPSPQIVTVTSGDLSESTPAVADQCLSNSDVVVVPLTSQHSTGGGSETISYTPTAITTIPPNIAN CSIVIKVLKHGSQLGRLVDLAQFNGHDQLVRELDRMFGFRGSLVDGSSGWHVTYVDAADSQHHHDSTSEIMFPIADRQWQLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10005930 [exp]	0	1
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10021802 [exp]	10.4	0.7896
					Lus10034388 [exp]	23.2	0.7412
AT2G16460			Protein of unknown function (D...		Lus10041812 [exp]	28.1	0.7336
					Lus10014195 [exp]	33.0	0.7302
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	40.0	0.7265
AT5G13825			unknown protein		Lus10000042 [exp]	43.9	0.7264
					Lus10002411 [exp]	46.8	0.7252
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031007 [exp]	47.3	0.7247
AT4G31920	GARP	ARR10	response regulator 10 (.1)		Lus10025044 [exp]	57.8	0.7204
					Lus10019564 [exp]	59.2	0.7221

Compare expression of checked genes

Lus10005930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.