Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47940 452 / 1e-154 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G40200 307 / 2e-98 DEGP9 DegP protease 9 (.1) AT5G36950 211 / 6e-62 DEGP10 DegP protease 10 (.1) AT1G65640 185 / 2e-53 DEGP4 DegP protease 4 (.1) AT1G65630 176 / 8e-49 DEGP3 DegP protease 3 (.1) AT3G16540 160 / 2e-43 DEGP11 DegP protease 11 (.1) AT5G40560 144 / 2e-38 DEGP13 DegP protease 13 (.1) AT3G16550 136 / 5e-35 DEGP12 DEGP protease 12 (.1) AT1G51150 98 / 3e-23 DEGP6 DegP protease 6 (.1) AT5G54745 81 / 2e-17 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032163 [exp] 308 / 8e-99 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 307 / 2e-98 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10040905 [exp] 239 / 6e-78 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10024525 [exp] 199 / 1e-57 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10008726 [exp] 171 / 8e-49 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10008781 [exp] 66 / 2e-11 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 57 / 1e-08 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10022234 [exp] 56 / 3e-08 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10042822 [exp] 44 / 0.0001 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135200 [exp] 448 / 1e-152 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 436 / 3e-148 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 307 / 1e-98 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 305 / 5e-98 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.008G079900 [exp] 207 / 2e-60 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.001G348800 [exp] 67 / 8e-12 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 59 / 4e-09 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 50 / 1e-06 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.013G018300 [exp] 50 / 2e-06 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.007G067850 [exp] 41 / 0.0003 AT5G40200 45 / 5e-06 DegP protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10005931 pacid=23146066 polypeptide=Lus10005931 locus=Lus10005931.g ID=Lus10005931.BGIv1.0 annot-version=v1.0 ATGCAGGTTGGAGCTGTCATTCTTCAGAGTGCAGCTTTCCTTAATGCGGTCGTCAAGGTTTACTGCACTCACACGGCACCTCACTATTCCCTCCCTTGGC AAAAACAAAGGCAATTTACAAGCACTAGCAGTGCTTTTATGATAGGAGATGGAAAGCTTCTAACAAATGCAGACTGTGTTGAACACATACGCAGAGGAGT TGATTGTGATATAGCTTTGCTTGCTGTTGAAAGTGAGAAATTTTGGGAGGAGGCTGAACCATTACAATTGGGTCACTTGCCCCACCTTCAGGATGCAGTA ACTGTTGTAGGGTATCCACTTGGAGGTGACACTATTTCAATGACAAAGGGAGTTGTATCACGTATAGAGGTTACTTCGTATGCGCATGGATCATCTGAAT TACTTGGAATCCAAATTGATGCAGTCATAAATCCTGGTAATAGTGGTGGTCCAGCATTTAATGACCATGGTGAGTGCATTGGAGTCACATTTCAGGTTTA CAGATCTGAAGAGGCTGAGAATATTGGATATGTTATTCCGACAATCGTGGTCTCTCATTTCTTGAGAGACTATGAGAGGAACCAGAAATACACTAATACT GCGTTGGTGAGTAGTTTGGCAGGAAAACCTTGCAATTTCCCTCATCAGCACTGCGTAACCTTGATCATAGGACCATCACTTAGTATAATGAGGTCATGCT TAACTAAACTTACAGGCTTCCATGCGCATGGTGTATTACTTCAAAAGTTGGAAAACCCGGCTTTGAGAGAGTGCTTGAAACTCCCATCCAGCAGGCCTTG TCAGCTATGTTCAGAGATGCTGAGGATATTTCCTTCTCTCTTTTGTTTTCAGGGTGATGTGATTGTGAGCTTTGATAATAGGTGCGAAGGAACTGTGCCA TTCCGGTCGAACGAGCGAATTGCATTTCGTTACCTAATTAGTCAAAAATTTGCAGGCGATGTAGCTGAACTTGGCGTTATTAGATGTGGCGAACTCATGA AAGTTAAAGTGGCTCTAATTCCAAGAGTTCATTTGGTGTTAGCATATGAAGTCAACATCGGATACGAGGATATGGGCAATCAACAGGTTTTGAAATTCAA CGGCACTCTGATAAGAAACATACATCATTTAGCCCACCTCATTGACTCATGCACAGGAAAATACTTGGTGTTCGAATTTGAAGACAATTACTTGGTTGTC TTGGAGAAAGAAGCAGCTCTTGGTGCTTCATCACAGGTTCTCCTAGATTACGGGATACCGTCCGAAAGATCATCCGATCTACTACAGCCATATGTGGATT CGAACAACGAAACCAACCAGCCAGTCGCGAATGGGGACTTTGGAGATGGTCCTGTGACCAATCTGGAAATCGGGGTCGATGGAATCCTTTGGGCATGA
AA sequence Show only first row Show all	>Lus10005931 pacid=23146066 polypeptide=Lus10005931 locus=Lus10005931.g ID=Lus10005931.BGIv1.0 annot-version=v1.0 MQVGAVILQSAAFLNAVVKVYCTHTAPHYSLPWQKQRQFTSTSSAFMIGDGKLLTNADCVEHIRRGVDCDIALLAVESEKFWEEAEPLQLGHLPHLQDAV TVVGYPLGGDTISMTKGVVSRIEVTSYAHGSSELLGIQIDAVINPGNSGGPAFNDHGECIGVTFQVYRSEEAENIGYVIPTIVVSHFLRDYERNQKYTNT ALVSSLAGKPCNFPHQHCVTLIIGPSLSIMRSCLTKLTGFHAHGVLLQKLENPALRECLKLPSSRPCQLCSEMLRIFPSLFCFQGDVIVSFDNRCEGTVP FRSNERIAFRYLISQKFAGDVAELGVIRCGELMKVKVALIPRVHLVLAYEVNIGYEDMGNQQVLKFNGTLIRNIHHLAHLIDSCTGKYLVFEFEDNYLVV LEKEAALGASSQVLLDYGIPSERSSDLLQPYVDSNNETNQPVANGDFGDGPVTNLEIGVDGILWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	0	1
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	1.7	0.9642
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	2.0	0.9641
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	2.0	0.9607
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	2.2	0.9585
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	2.4	0.9609
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	4.9	0.9448
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	5.2	0.9448
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	7.7	0.9284
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	7.7	0.9526
AT1G09320			agenet domain-containing prote...		Lus10031429 [exp]	9.0	0.9154

Compare expression of checked genes

Lus10005931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.