Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005932 pacid=23146048 polypeptide=Lus10005932 locus=Lus10005932.g ID=Lus10005932.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCACTTTCTTCAATCCTAGCAATCTCCTTCATAATGATAATGTCAATATCATCATCCACAGCTTTTGCATCTCACAATCAGCATCACCATA TCCACAAAGCAATCAACTTTGAGCTCTCCACCATCTCTGCAGCTCCCACATCGCTCCCATCAGAAGAATCACCCCTCCTTTCTCCTTCCACTCTCCCTCC AACTTTATCTCCAGACGTCCAGCCTGAGTTGCCTACTACTCCAGGAGCATCCTCCCCTTCTCCGGCTGACGATTCTTCAATCCCATCCATCCCTGCAACT CCAAGCCCTCCCAACCCAGATGCTGCTATGGACTCCCCAGATGCTGCTGTGGCTGGTTTTTCACCTTCTGACTCCTCCATTCCTCCTCCTCTTTCTTCCT CTGCTCTCATCTCAACAGTTGCAGCACCACTAATGCTCTTGTGTATTGCCATTCAGCTGCACTTCTGGTAA
AA sequence Show only first row Show all	>Lus10005932 pacid=23146048 polypeptide=Lus10005932 locus=Lus10005932.g ID=Lus10005932.BGIv1.0 annot-version=v1.0 MASPLSSILAISFIMIMSISSSTAFASHNQHHHIHKAINFELSTISAAPTSLPSEESPLLSPSTLPPTLSPDVQPELPTTPGASSPSPADDSSIPSIPAT PSPPNPDAAMDSPDAAVAGFSPSDSSIPPPLSSSALISTVAAPLMLLCIAIQLHFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Lus10005932 [exp]	0	1
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	3.2	0.8874
					Lus10010492 [exp]	5.7	0.8643
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	11.0	0.9045
AT3G11590			unknown protein		Lus10013312 [exp]	11.2	0.8831
AT3G17120			unknown protein		Lus10017073 [exp]	13.5	0.8613
					Lus10042355 [exp]	16.5	0.8574
AT1G63850			BTB/POZ domain-containing prot...		Lus10028772 [exp]	19.1	0.8754
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	19.9	0.8374
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	20.5	0.8171
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	21.1	0.8976

Compare expression of checked genes

Lus10005932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.