Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03470 110 / 9e-28 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G47920 103 / 7e-26 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 94 / 1e-20 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G03080 94 / 1e-20 kinase interacting (KIP1-like) family protein (.1) AT3G22790 94 / 1e-20 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 90 / 2e-19 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 90 / 2e-19 Kinase interacting (KIP1-like) family protein (.1) AT4G02710 90 / 3e-19 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 89 / 4e-19 kinase interacting (KIP1-like) family protein (.1) AT5G58320 87 / 2e-18 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040904 [exp] 674 / 0 AT1G03470 110 / 5e-28 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Lus10039359 [exp] 94 / 1e-20 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 92 / 5e-20 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 92 / 5e-20 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 91 / 1e-19 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 91 / 2e-19 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 91 / 2e-19 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 86 / 9e-18 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 85 / 1e-17 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G207700 [exp] 130 / 9e-34 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1) Potri.014G135000 [exp] 125 / 1e-32 AT2G47920 129 / 4e-35 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 96 / 2e-21 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.003G164200 [exp] 93 / 2e-21 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 94 / 9e-21 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 93 / 2e-20 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.007G011300 [exp] 92 / 5e-20 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 92 / 5e-20 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 92 / 6e-20 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 91 / 1e-19 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10005933 pacid=23146045 polypeptide=Lus10005933 locus=Lus10005933.g ID=Lus10005933.BGIv1.0 annot-version=v1.0 ATGACGATTGCGAGTCTGACGATGAGGAATGAAACTAATTCACATAAGTGGTGGTTGAATGACAGTAACCATGCCTCCACTCGCTCTCCATGGCTACGGT ATTCCCTTGGTGAACTAGAACGGAAAACAACGGCGATGCTGAAAGTGATCGAGCAAGATGCAGATTCTTTTGCTCAGAGGGCGGAGATGTACTACAAGAA ACGACCAGAGCTAATCAACATGGTTGAGGACTTTTACAGGACACATCGTTCTTTAGTGGAGGAGTATGATCAGCTCAAGTCCGAAACAAGAGGGAGCCGA CGTCGCCTACTGTCTCTAACCTCTTCACTTTCGGTTGACTTTGAGCCTGGGAACCGATCAACAATGAGCATGATGACTGCTAATCAGGCTTGCGACTGCA AATCAACTATGAGCAGGATGAGTGATGACCATCATCAAGCCTTCGACTGCAAATCCACAATGAGCGGTGCAACGGGTGATTATCAAGCTTACGACTTCAA ATTGACACTGAGTGGGATGGAAGATCATTGCAAAGCCTCCTACGACTGTGAATCTACAATGAGCGGGATGTCTGATCATCTTCAACCCTCCTACGACTGC AAATCGACAACCAGCCGCTCTGACATATATGAGCATGAGGACTCTGCTGCAGAATCTGAAGTTGACGACCCTGAGCTTGAAGAGGACGGAATTCCAGAGC TACTGGACGAAGCAGAAAAAAATAGTAGTTTCGAGAAAGCTTCTGAAGAGATGCAGAGAGAGTACGAGGCGCGTTTTGAATCTCTGAATGAAGAAATGAA GACGTTGAAGGAAGAAGCTGAACAGCTGAAAGAGGAGAACAGAGTCCAGAAGGAAGAGCTGTGGCAGAAAGATGAGGAGAAGAGAGAAGTAATCAGACAG CTGAGCTTAGGTATGGAGATGCTGAGGTATGAGAATATGGAATTGAGAAAGAAGCAGCAATCTGCTGAGAGAAGAAGCCCTGCTGGCGTTGGTTTCGAGT TTGGGAAACTGAAAGACACAATTTTCACAAAGCTTTTCCATGGCTCTCCAGCACCCAGGGTTATAATTGCAGCTCCCCAGATCCGTCTCTGA
AA sequence Show only first row Show all	>Lus10005933 pacid=23146045 polypeptide=Lus10005933 locus=Lus10005933.g ID=Lus10005933.BGIv1.0 annot-version=v1.0 MTIASLTMRNETNSHKWWLNDSNHASTRSPWLRYSLGELERKTTAMLKVIEQDADSFAQRAEMYYKKRPELINMVEDFYRTHRSLVEEYDQLKSETRGSR RRLLSLTSSLSVDFEPGNRSTMSMMTANQACDCKSTMSRMSDDHHQAFDCKSTMSGATGDYQAYDFKLTLSGMEDHCKASYDCESTMSGMSDHLQPSYDC KSTTSRSDIYEHEDSAAESEVDDPELEEDGIPELLDEAEKNSSFEKASEEMQREYEARFESLNEEMKTLKEEAEQLKEENRVQKEELWQKDEEKREVIRQ LSLGMEMLRYENMELRKKQQSAERRSPAGVGFEFGKLKDTIFTKLFHGSPAPRVIIAAPQIRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	0	1
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10026803 [exp]	5.5	0.9306
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	6.5	0.9431
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10007735 [exp]	7.3	0.8925
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	7.4	0.9176
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	8.4	0.9313
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	9.6	0.9347
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	10.7	0.9360
AT1G54385			ARM repeat superfamily protein...		Lus10010672 [exp]	11.2	0.9209
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	11.5	0.9175
AT4G17240			unknown protein		Lus10039062 [exp]	13.0	0.8992

Compare expression of checked genes

Lus10005933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.