Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 700 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 696 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 609 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 533 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 164 / 4e-43 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 142 / 2e-35 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT4G03180 70 / 2e-13 unknown protein AT1G14660 54 / 3e-07 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040903 [exp] 957 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 693 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 685 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 662 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 630 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 627 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 540 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 425 / 1e-141 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10040902 [exp] 242 / 1e-74 AT4G03180 143 / 3e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134900 [exp] 731 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 712 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 710 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 707 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 590 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 144 / 3e-36 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Potri.014G134700 [exp] 65 / 1e-11 AT4G03180 102 / 3e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10005934 pacid=23146069 polypeptide=Lus10005934 locus=Lus10005934.g ID=Lus10005934.BGIv1.0 annot-version=v1.0 ATGAAGAATCGGGAGCCAGCGAATGGAGATGGTGGCTCAAAATCATTCTCCCTAAAAAAGAAGAAGAATATGCAGAGGTTGGCAGGAAGAAGCGGTGGCG GAGGCCTATCTCTTGAAACCTTCGCCAATATCAAATCCACCACCAACAACTACAATCCTTCCATAATTAAAAAGAAGAGGGAATTTTATAAGAATGCCAA ATATGTTAGCAAATTTAAGAAGCAGCTAAAGCAAGAGAATTACCAACCTCAACCTTCCTTGGCGTTCACAGAGGGCAGGGATGATGCAGGAGAAGGCAGC ACGAGCACGAAAAGAAACAAGAAGAATGGTCGCCATGATGATGGCAATGAAGGTGGCGAGATTGCTAGAAGCAACAAGAAGAACAAGGGGAAGAATCCAT ACAGCTTGAAAGAACTCTACGAGAAGCAGCGTGAAGAGGCCGAAAAGGCGAAAATGGCAAAAGAAGTAATCATCAAAGCAAATCAGGTAGAAAGAGCCAG GGCTGAAGCTAAAAGGAAAGCCACCAAGGAGAATCTTTTATTGCTGAGTACAGTGAGGATGTATGATCCAAGCTCTCAGGACTCTGAGTCTCATGCGATG CGGTGGACAACCAAAGCTCGCCGTGGGCGAGGGGACTGGATGCAGATGAACATGAAAGCTAAAGCAATGAGGAGAGCCATGAGGAGACCGTTGAGACCTG GACCATCACTGTCTGGCAACTCGGATTCCCGCTACAGCTCCTACCCGTCTCATCATCTTCTGCTGCAGAGGAGATTCCGCTCCAGGTGCTTCCAGACGAG TCATCTTGTTTCTGTTTCAAGTCTGATGATGGGATTCAGCTTGAAATCTTTGTTCATGGGATTGGGGGGCTCGATTGGGGAACCAGATACTGCCCCTGTT CGTGCCATAACTCTATTTGTGGTACTCATCCTCGCTTGCATTGTTATTGGCCATCTTCTAGAGAAGAGTCGATGGATGAATGAGTCTACCACTGCCCTTC TGATTGGTGTCGCTACTGGAATTCTTATCCTGGTGACCACAGAAGGGAAAAGCTCACGGCTTTTGATATTCGACGAGGATCTTTTCTTCATATATCTCCT TCCACCCATCATATTCAATGCTGGGTTCCAAGTGAAAAAGAAACAGTTCTTCCGCAACTTTATGACAATCACATTGTTTGGTGCTGTCGGGACTTTAATA TCGTTTGTTATTATATCCCTTGGAGCAAAGAAGTTATTTGATCTAATGGGCATTGATTTCTTGGACACAAAGGACTATCTAGCACTGGGGGCAATTTTTT CAGCAACAGACAGTGTTTGCACCTTGCAGGTGCTCAGTCAGGAAGAGACCCCTTTGCTGTACAGTCTTGTTTTTGGAGAAGGTGTGGTCAATGATGCCAC ATCTGTCGTTCTTTTCAATGCGATCCAGCGCTTTGACCTCTCTCACATGACTTCAAGCATTGCGCTACAGTTGCTTGGAAGCTTCTTATATTTGTTTTTC ACAAGCACATTGCTTGGTGTCGTCGTTGGATTATTGAGTGCTTACATCATAAAGAAGTTGTACTTTGGAAGACATTCTACTGATCGTGAAGTTGCTCTGA TGATGCTCATGGCTTATCTTTCATATGTTATGGCTGAATTGTTCAGTTTAAGTGGCATCCTCACGGTGTTCTTCTGTGGGATTGTCATGTCACATTATAC ATGGCATAATGTGACCGAAAGCTCAAGAGTTACCGCGAAGCATGCTTTTGCGACATTGTCATTCATTTCAGAAATATTCATATTCTTATATGTTGGTATG GATGCCCTGGATATTGAGAAGTGGAGAATTATTGGCAAGAGTCCTGGAACTTCAGCTGGTGTGAGCTCAGTATTGCTTGGGATGGTACTTTTGGGGCGAG CAGCTTCTGTCTTTCCCCTCTCCTTTGTATCTAATTTAACAAAGAAGTCTGGCAGTGAGAAAATACGGTTCAAGGAGCAGATTATAATATGGTGGGCTGG ACTCATAAGAGGGGCTGTTTCCATGGCACTTGCTTACAACCAGTTCACAATGGCGGGGTACACGCAGCTACAAGGAAATGCCTTTATGATCACCAGCACC ATTACAATTGTTCTGTTCAGTACAGTGGTGTTTGGATTGTTAACCAAACCGCTGATAAGGTGGTTGTTACCACACCATTGTAGAAGCAGCAGCAGCTCAG AGCTAGAAGAAGAGAATGAGAAAGCTCTGTCTTTGCCTCTTCTTCTTGAGAGCACCAGACAAGATCCGGCAGCAGAGACGAGTGCTGATAACATTCAGCG GCCGATGAGTCTACGCATGCTCCTGAGCAAGCCGACAAATACCGTGCATTACTACTGGCGAAAATTCGACGACAGCTTCATGCGGCCTATGTTTGGAGGA CGGGGATTCACTCCTTTTGTTCCTGGATCACCCATAGAAAGGAGCCTTCACGGAGGGAAGTAG
AA sequence Show only first row Show all	>Lus10005934 pacid=23146069 polypeptide=Lus10005934 locus=Lus10005934.g ID=Lus10005934.BGIv1.0 annot-version=v1.0 MKNREPANGDGGSKSFSLKKKKNMQRLAGRSGGGGLSLETFANIKSTTNNYNPSIIKKKREFYKNAKYVSKFKKQLKQENYQPQPSLAFTEGRDDAGEGS TSTKRNKKNGRHDDGNEGGEIARSNKKNKGKNPYSLKELYEKQREEAEKAKMAKEVIIKANQVERARAEAKRKATKENLLLLSTVRMYDPSSQDSESHAM RWTTKARRGRGDWMQMNMKAKAMRRAMRRPLRPGPSLSGNSDSRYSSYPSHHLLLQRRFRSRCFQTSHLVSVSSLMMGFSLKSLFMGLGGSIGEPDTAPV RAITLFVVLILACIVIGHLLEKSRWMNESTTALLIGVATGILILVTTEGKSSRLLIFDEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTLI SFVIISLGAKKLFDLMGIDFLDTKDYLALGAIFSATDSVCTLQVLSQEETPLLYSLVFGEGVVNDATSVVLFNAIQRFDLSHMTSSIALQLLGSFLYLFF TSTLLGVVVGLLSAYIIKKLYFGRHSTDREVALMMLMAYLSYVMAELFSLSGILTVFFCGIVMSHYTWHNVTESSRVTAKHAFATLSFISEIFIFLYVGM DALDIEKWRIIGKSPGTSAGVSSVLLGMVLLGRAASVFPLSFVSNLTKKSGSEKIRFKEQIIIWWAGLIRGAVSMALAYNQFTMAGYTQLQGNAFMITST ITIVLFSTVVFGLLTKPLIRWLLPHHCRSSSSSELEEENEKALSLPLLLESTRQDPAAETSADNIQRPMSLRMLLSKPTNTVHYYWRKFDDSFMRPMFGG RGFTPFVPGSPIERSLHGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	0	1
AT4G36980			unknown protein		Lus10019346 [exp]	1.0	0.8868
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	1.4	0.8667
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	1.7	0.8596
AT1G80940			unknown protein		Lus10041624 [exp]	3.2	0.8567
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	4.9	0.8569
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	5.7	0.8167
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	6.5	0.8507
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	8.8	0.8012
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	8.9	0.8139
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	9.2	0.8255

Compare expression of checked genes

Lus10005934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.