Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47890 126 / 2e-35 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT2G33500 75 / 7e-16 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 70 / 3e-14 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT3G02380 65 / 1e-12 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15840 63 / 6e-12 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT3G07650 62 / 2e-11 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G57660 62 / 2e-11 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT5G15850 62 / 2e-11 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G24930 59 / 2e-10 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G48250 59 / 2e-10 CO COL10 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040900 [exp] 387 / 8e-137 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10002578 [exp] 79 / 4e-17 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 78 / 9e-17 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 61 / 6e-11 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 61 / 7e-11 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10036419 [exp] 60 / 9e-11 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10042431 [exp] 58 / 2e-10 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10005106 [exp] 58 / 5e-10 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10026238 [exp] 57 / 5e-10 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208100 [exp] 186 / 4e-58 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 107 / 4e-28 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 74 / 1e-15 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.001G061800 [exp] 72 / 6e-15 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 68 / 2e-13 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.007G121200 [exp] 62 / 1e-11 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.014G170600 [exp] 62 / 2e-11 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.004G108320 [exp] 61 / 4e-11 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.017G107500 [exp] 59 / 1e-10 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.017G039301 [exp] 59 / 2e-10 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10005936 pacid=23146056 polypeptide=Lus10005936 locus=Lus10005936.g ID=Lus10005936.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCTCCTCTGCCCAAGAATCGAAATGCTGCTTGTGGACGGCACAAGGAGGAAATAATTCGTCAGCTTCGTCTTATAGCAAGATTGGAACCTG AGAATGGGAAAATTGATCCTCTCAGCTTGTTCGAATCAGTCCCTACTGAACAGAATATGGTTCCAGACAGCAATTGCTCGGGATCTGATCACAATTTGTT CCCTGCTTATGAGGAGCATCTCTTTCACTGGCACAATGATGATGAAGATGCTGTTAATCAAGCTTTTATTTCTTCTATTCTGAGAACCAACTTGGACGAA GGTTCTGCAACACTCGACAAGCAGTCTAAGACTGCTGATGATGAGGATGAAGCAAAGCCACAACATCCGGCTAGGACATTACCGACTTTTCCAAAAGTTG CAGCACATGAGATAAACAGCCAGGAGAGGGACTCTGCAATCTCAAGGTACAAGGAGAAGAAAAAAACAAGAAGGTATGACAAGCATATCAGGTACGAATC AAGAAAGGCTCGAGCAGAAAGCCGAACGAGAGTCAGAGGGCGTTTTGCTAAGATTCAACAGTAA
AA sequence Show only first row Show all	>Lus10005936 pacid=23146056 polypeptide=Lus10005936 locus=Lus10005936.g ID=Lus10005936.BGIv1.0 annot-version=v1.0 MGVPPLPKNRNAACGRHKEEIIRQLRLIARLEPENGKIDPLSLFESVPTEQNMVPDSNCSGSDHNLFPAYEEHLFHWHNDDEDAVNQAFISSILRTNLDE GSATLDKQSKTADDEDEAKPQHPARTLPTFPKVAAHEINSQERDSAISRYKEKKKTRRYDKHIRYESRKARAESRTRVRGRFAKIQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	0	1
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10040900 [exp]	1.0	0.8867
AT5G18130			unknown protein		Lus10005702 [exp]	2.4	0.8632
AT5G18130			unknown protein		Lus10020284 [exp]	2.8	0.8573
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	4.0	0.8303
AT3G04880		DRT102	DNA-DAMAGE-REPAIR/TOLERATION 2...		Lus10015936 [exp]	5.5	0.8366
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	6.9	0.8684
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10039574 [exp]	7.1	0.7972
AT1G15060			Uncharacterised conserved prot...		Lus10034107 [exp]	8.4	0.7663
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	12.7	0.8302
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	13.2	0.7730

Compare expression of checked genes

Lus10005936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.