Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62950 166 / 4e-55 Thioredoxin superfamily protein (.1) AT2G47870 157 / 1e-51 Thioredoxin superfamily protein (.1) AT3G21460 133 / 6e-42 Glutaredoxin family protein (.1) AT4G15700 113 / 5e-34 Thioredoxin superfamily protein (.1) AT2G47880 112 / 8e-34 Glutaredoxin family protein (.1) AT4G15680 112 / 1e-33 Thioredoxin superfamily protein (.1) AT4G15670 112 / 1e-33 Thioredoxin superfamily protein (.1) AT4G15660 111 / 2e-33 Thioredoxin superfamily protein (.1) AT4G15690 111 / 2e-33 Thioredoxin superfamily protein (.1) AT5G18600 111 / 3e-33 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040898 [exp] 214 / 5e-74 AT3G62950 167 / 2e-55 Thioredoxin superfamily protein (.1) Lus10012815 [exp] 135 / 6e-43 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1) Lus10033965 [exp] 119 / 2e-36 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 116 / 2e-35 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1) Lus10029441 [exp] 103 / 6e-30 AT3G62930 145 / 1e-46 Thioredoxin superfamily protein (.1) Lus10005941 [exp] 102 / 7e-30 AT3G62930 145 / 8e-47 Thioredoxin superfamily protein (.1) Lus10040899 [exp] 101 / 3e-29 AT2G30540 140 / 5e-45 Thioredoxin superfamily protein (.1) Lus10005937 [exp] 100 / 7e-29 AT2G47880 138 / 7e-44 Glutaredoxin family protein (.1) Lus10035183 [exp] 97 / 5e-27 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208500 [exp] 185 / 2e-62 AT3G62950 171 / 5e-57 Thioredoxin superfamily protein (.1) Potri.014G134200 [exp] 183 / 1e-61 AT3G62950 169 / 4e-56 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 142 / 2e-45 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.014G134300 [exp] 121 / 2e-37 AT2G30540 157 / 1e-51 Thioredoxin superfamily protein (.1) Potri.002G208400 [exp] 117 / 9e-36 AT2G30540 160 / 8e-53 Thioredoxin superfamily protein (.1) Potri.008G214800 [exp] 117 / 1e-35 AT5G18600 157 / 2e-51 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 116 / 3e-35 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.008G214600 [exp] 115 / 4e-35 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1) Potri.002G209300 [exp] 111 / 2e-33 AT1G03020 143 / 7e-46 Thioredoxin superfamily protein (.1) Potri.001G325800 [exp] 109 / 2e-32 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10005938 pacid=23146034 polypeptide=Lus10005938 locus=Lus10005938.g ID=Lus10005938.BGIv1.0 annot-version=v1.0 ATGGACAGAGTCAGAGACTTGGCATCGAAGAAGGCGGCGGTGGTGTTTACCAAGAGCACGTGCTGCATGTGCCACAGCATCAAGCAGCTCTTCTACGAGC TAGGGGCCAGCCCGGCGATCCACGAGGTGGACCGGGAGGCTAACGGCAGGGAAATGGAGTGGGCCCTCCGGTCGCTCGGATACTCCACCACCGTCCCTGC GGTGTTCATAGGAGGGAGATACGTGGGGTCCGCTAAGGAAGTCTTGTCGCTTCACCTCGACGGCACTCTCAAGCAAATGCTTATAGATGCAAATGCCATC TGGTTCTAG
AA sequence Show only first row Show all	>Lus10005938 pacid=23146034 polypeptide=Lus10005938 locus=Lus10005938.g ID=Lus10005938.BGIv1.0 annot-version=v1.0 MDRVRDLASKKAAVVFTKSTCCMCHSIKQLFYELGASPAIHEVDREANGREMEWALRSLGYSTTVPAVFIGGRYVGSAKEVLSLHLDGTLKQMLIDANAI WF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	5.0	0.7771
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	8.7	0.7315
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	9.2	0.7038
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	12.4	0.7694
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	15.3	0.7241
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	16.9	0.7565
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	18.1	0.7023
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	18.7	0.6353
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014219 [exp]	23.5	0.6651
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001876 [exp]	24.4	0.7052

Compare expression of checked genes

Lus10005938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.