Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62940 343 / 9e-118 Cysteine proteinases superfamily protein (.1.2.3) AT5G67170 78 / 4e-16 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 70 / 4e-13 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT2G38025 49 / 2e-06 Cysteine proteinases superfamily protein (.1) AT5G04250 45 / 4e-05 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040897 [exp] 532 / 0 AT3G62940 359 / 1e-124 Cysteine proteinases superfamily protein (.1.2.3) Lus10005193 [exp] 75 / 9e-15 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10013303 [exp] 64 / 6e-11 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10006255 [exp] 62 / 1e-10 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10010459 [exp] 47 / 1e-05 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134100 [exp] 417 / 3e-147 AT3G62940 338 / 9e-116 Cysteine proteinases superfamily protein (.1.2.3) Potri.004G196800 [exp] 77 / 2e-15 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.009G160100 [exp] 75 / 9e-15 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 62 / 2e-10 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.016G110400 [exp] 48 / 3e-06 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.006G021700 [exp] 46 / 1e-05 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 45 / 3e-05 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.006G057400 [exp] 44 / 7e-05 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G019700 [exp] 40 / 0.001 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10005939 pacid=23146030 polypeptide=Lus10005939 locus=Lus10005939.g ID=Lus10005939.BGIv1.0 annot-version=v1.0 ATGGCCGACACCGTTGATGCGATTGATCAACCATCTGATGATGCTGCTGCTGTTGGCGATACTGAAAAGAAGCAGGAAAATCGCGATGAGATGCTCGCCA GGCATAGGAAGGAGACAACAGCGCTGCAGAACAAAGAAATTGAACTGAAGAAGGGGGCAGCAAAAGGGAGCAAAACGGAACAGAAAGCCAAGAAGAAGCA AGTTGAAGAACAAATAACACGGCTTTCTACTGAGCTCAAAGAGAAGCAAGCGCAAGAGCTTGCTTCATTAGGCTATGTCAATAGCAATGACAGCGAGAAA GGCAACCTCGATACGCTAGTGAAGGCCATAGCTGGGGTTTCTGTCAGCAGTCCCTCTGCTGATAACAGTACCAGGAGGAGCAAAGGTGGGAAAAGGAAAG ATAAGAGAGCTCAGCAAGAAGCTGAGAGAGAGAAAAGGATCCAGGAAGAACAGAGCAACCTTGTGAGTGACAGAATGATTGAAGACGAGAAACTGGGGAG AAAGCTCGAGCCCCTTGGGTTGACTGTTAATGAGATCAAACCGGACGGTAATTGCCTCTACCGAGCTGTGGAAGACCAGCTAGCTCTCCTTTCTGGCGGT TCTTCCCCATATACCTACCAAGATCTCCGGGAAATGGTGGCAGCGTATATGAGAAAGAACTCGTCGGAGTTCCTGCCGTTTTTCCTTTCCGAAACAGATA ATGCAGAAGAAGCAGAATCTGACAGTACTCTCACGGAGAGATTCGAGAGTTACTGTAAGGAAATCGAATCGACAGCTGCTTGGGGTGGACAACTGGAGCT GGGTGCTTTAACTCACTGCTTGAGGAGGCCTATAATGATATATTCAGGATCGTTCCCTGATGTTGAGATGGGGAAGGAATACAAACCAGGCGGTGGTTCG TCGTCTACAGCAAATATTATGCTGTCATATCATAAGCATGCATTTGGGCTTGGTGAACATTACAACTCTGTAGTTCCCAGTTTGATTAGGTAG
AA sequence Show only first row Show all	>Lus10005939 pacid=23146030 polypeptide=Lus10005939 locus=Lus10005939.g ID=Lus10005939.BGIv1.0 annot-version=v1.0 MADTVDAIDQPSDDAAAVGDTEKKQENRDEMLARHRKETTALQNKEIELKKGAAKGSKTEQKAKKKQVEEQITRLSTELKEKQAQELASLGYVNSNDSEK GNLDTLVKAIAGVSVSSPSADNSTRRSKGGKRKDKRAQQEAEREKRIQEEQSNLVSDRMIEDEKLGRKLEPLGLTVNEIKPDGNCLYRAVEDQLALLSGG SSPYTYQDLREMVAAYMRKNSSEFLPFFLSETDNAEEAESDSTLTERFESYCKEIESTAAWGGQLELGALTHCLRRPIMIYSGSFPDVEMGKEYKPGGGS SSTANIMLSYHKHAFGLGEHYNSVVPSLIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62940			Cysteine proteinases superfami...		Lus10005939 [exp]	0	1
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10027019 [exp]	11.6	0.8401
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	17.3	0.8507
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	20.2	0.8452
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	22.8	0.8376
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	24.6	0.8354
AT1G55270			Galactose oxidase/kelch repeat...		Lus10030072 [exp]	33.9	0.8232
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	44.0	0.8130
AT1G54310			S-adenosyl-L-methionine-depend...		Lus10001763 [exp]	44.2	0.7462
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	47.3	0.8262
					Lus10001993 [exp]	48.2	0.7925

Compare expression of checked genes

Lus10005939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.