Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03010 764 / 0 Phototropic-responsive NPH3 family protein (.1) AT2G47860 662 / 0 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 411 / 8e-136 Phototropic-responsive NPH3 family protein (.1) AT3G08570 377 / 1e-122 Phototropic-responsive NPH3 family protein (.1) AT5G67385 345 / 1e-110 Phototropic-responsive NPH3 family protein (.1) AT3G08660 336 / 3e-107 Phototropic-responsive NPH3 family protein (.1) AT1G30440 301 / 5e-93 Phototropic-responsive NPH3 family protein (.1) AT5G03250 277 / 9e-85 Phototropic-responsive NPH3 family protein (.1) AT2G30520 277 / 1e-84 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G13600 263 / 2e-79 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029443 [exp] 628 / 0 AT1G03010 496 / 4e-172 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 448 / 3e-150 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 315 / 2e-98 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 301 / 7e-94 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 300 / 1e-92 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 282 / 6e-86 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 274 / 8e-83 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 274 / 1e-82 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 273 / 1e-82 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133500 [exp] 847 / 0 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 843 / 0 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 451 / 2e-151 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 422 / 2e-140 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 383 / 3e-125 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 304 / 1e-94 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 294 / 8e-91 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 292 / 2e-89 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G090400 [exp] 288 / 1e-88 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 279 / 1e-84 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10005943 pacid=23146062 polypeptide=Lus10005943 locus=Lus10005943.g ID=Lus10005943.BGIv1.0 annot-version=v1.0 ATGGGAGTTGTAACAGTTGGTGATCAGCTGAAACCAAGCATCTCTGGCAAGAGAAGTTTCCGTCCCAGTTCCAGCATCCGACATGCCACTGAATGGCCCA TTTCTGACGTCTCCAGTGATCTCACAGTTGAAGTTGGAGGTTCAACCTTTGCACTTCACAAGTTCCCTCTGGTTTCACGAAGTGGAAGGATCAGAAAACT ATTACTGGAATCAAAAGACTCCAACAAGGTCTCCAAGATAACCATCCACGGCGTCCCCGGCGGAGCAGAAGCATTCGAAGCAGCTGCAAAGTTCTGCTAC GGAATCCACGTCGAGATCACGCTGTCAAACGTTGCGATGCTGAGGTGTGCATCCCATTTCCTGGAAATGAGCGAAGACTTCGCCGAAAAGAACATGGTAG CCAAGGCTGAATCTTTCCTTAAGGACACGGTGCTCCCCAACATATCGAACACCATCACCGTTCTTCACAGGTGCGAATCGCTCTTGCCCGTTTCGGAAGA CATCAATTTGGTGAACCGTCTCATCACTTCCATCGCCAACAATGCTTGCAAGGAGCAGCTGGCATCCGGGTTGCTGAAGCTGGATCATAACTTCCCGTCC AAATTTGTGGAGCCGGATCCGTCTTCGGATTGGTGGGGGAAGTCACTTGCAAGTTTGAGTCTTGATTTGTTCCAGAGGGTGTTGACGGCTGTGAAATCAA AGGGTTTGAAGCAGGACATGATCTGCAACATCCTCATGAACTATGCTCGCATTTCCTTACAGGGGCTTGCTGCTGTGAGGGATCCTCAGTTGGTTAAGGG AACAGTGATGGATTTGGAGCTAACAAAGAGGAAGCAAAGGGTAATTGTGGAAACAATAGTTGGGTTATTACCAACTCAGTCAAGAAAAAGTCCAGTCCCA ATTGCATTCCTTGCCAGCTTGCTCAAAGCATCCATTTCAGCATCAGCAACCACTTCATGTAGATCAGATTTGGAGAGGAGGATTGGTCTTCAACTGGACC AAGCCATTCTGGAAGACGTTCTGATTCCAACCAATTCCTACGGCAACAAGAACAACAATAACAACACTACAATGTATGACACTGACACCATCCTGAGGAT CTTCTCATTCTTCCTCAACTTGGATGATGATGACGATGATGATGAAGATCGAATGTGCGACGAGAATGATGAAATGATGTATGACTTTGATCACAGCCCT GGATCTCCAAAGCAAAGCTCAATCCTCCAAGTGTCAAAGCTACTAGACAACTACCTTGCAGAAGTGGCACTGGACTCCAACTTACATCCAACAAAGTTCA TATCACTTGCGGAGTTACTTCCTGATCATGCAAGGATTGTAAGCGACGGGTTGTACAGAGCGGTTGACATATTCCTTAAAGTCCACCCCAACATCAGGGA CCCGGCCCGGTACAGGCTGTGCAAGACAATAGACAGCCAGAAACTGTCTCAAGAGGCGTGCAGCCACGCTGCGCAGAACGAAAGGCTCCCGGTCCAGATG GCGGTCCAAGTTCTCTACTTTGAGCAGATAAGGCTAAGGAATGCAATGAATGGAGGAGGAGGAGGAAATAACCAGTTATTCTTTGGTGGTCAGTTTCCGC ATAGGTCAGGGAGTGGTGCGGGGAGTGGAGCCATATCTCCTAGGGACAATTACGCGTCGGTGAGGAGGGAGAATCGAGAGCTGAAGCTCGAGGTTGCGAG GATGAGAATGAGGCTGACTGACCTTGAGAAGGACCATGTTAGTATTAAGCAGGAGCTTGTGAGGACTCATCCTGCTAATAAGCTGTTCAAGTCGTTTGCT AGGAAACTTGGGAAGCTGAATTCTTTGTTTAGGATTAATCATGGGATTAATGCCATGGGAGTAGGGAAGGCTAGCTCGGAGACGAGGTTCTTGTTCCAGA GGAGAAGGCGCCACTCTGTTTCTTCACTGTAA
AA sequence Show only first row Show all	>Lus10005943 pacid=23146062 polypeptide=Lus10005943 locus=Lus10005943.g ID=Lus10005943.BGIv1.0 annot-version=v1.0 MGVVTVGDQLKPSISGKRSFRPSSSIRHATEWPISDVSSDLTVEVGGSTFALHKFPLVSRSGRIRKLLLESKDSNKVSKITIHGVPGGAEAFEAAAKFCY GIHVEITLSNVAMLRCASHFLEMSEDFAEKNMVAKAESFLKDTVLPNISNTITVLHRCESLLPVSEDINLVNRLITSIANNACKEQLASGLLKLDHNFPS KFVEPDPSSDWWGKSLASLSLDLFQRVLTAVKSKGLKQDMICNILMNYARISLQGLAAVRDPQLVKGTVMDLELTKRKQRVIVETIVGLLPTQSRKSPVP IAFLASLLKASISASATTSCRSDLERRIGLQLDQAILEDVLIPTNSYGNKNNNNNTTMYDTDTILRIFSFFLNLDDDDDDDEDRMCDENDEMMYDFDHSP GSPKQSSILQVSKLLDNYLAEVALDSNLHPTKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIRDPARYRLCKTIDSQKLSQEACSHAAQNERLPVQM AVQVLYFEQIRLRNAMNGGGGGNNQLFFGGQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSIKQELVRTHPANKLFKSFA RKLGKLNSLFRINHGINAMGVGKASSETRFLFQRRRRHSVSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	0	1
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	1.7	0.9616
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	4.5	0.9621
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	4.6	0.9657
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	6.9	0.9247
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	7.7	0.9492
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	8.7	0.9606
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	11.0	0.9566
AT5G42710			unknown protein		Lus10010807 [exp]	12.0	0.9497
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	13.1	0.9086
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	13.6	0.9572

Compare expression of checked genes

Lus10005943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.